Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq441 419 3e-112 seq1449 201 1e-46 seq1687 136 5e-27 seq979 125 9e-24 seq6273 82.4 1e-10 seq3926 82.4 1e-10 >seq441 Length=576793 Score = 419 bits (464), Expect = 3e-112 Identities = 1039/1568 (66%), Gaps = 18/1568 (1%) Strand=Plus/Minus Query 6590 TCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTA 6649 || || ||||| ||||| |||||||| ||||| | | || || ||||| || Sbjct 545368 TCTGCTTCTTGCACCATGCGGTCAATGTCATCTTTGCTGAGGCGGCCTTTGTCATTAGTT 545309 Query 6650 ATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCA 6709 || |||||||| | ||| || | | ||| || | ||| | ||||| | |||||| Sbjct 545308 ATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAGGATACCA 545249 Query 6710 TTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATA 6769 |||||||||| || ||| | || | |||||| || ||| | ||||| | ||||||| Sbjct 545248 TTTGCATCAATGTCAAACGTCACCTCAATTTGGGGCACACCACGAGGTGCAGGTGGAATA 545189 Query 6770 CCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCA 6829 ||||| | ||||| | || || | | | || ||| | | | | | ||||| ||| Sbjct 545188 CCCGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTGGTCATGGCTCTCTCACCCTCA 545129 Query 6830 TAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTC 6889 || |||| | ||| | ||||| ||| || | ||| | || || | Sbjct 545128 TACACTTGTACCAGCACACTACTCTGATTGTCTGAATAGGTGGTGAAAGTCTGGGTTTGC 545069 Query 6890 TTAGATGGAATCGTCGTATTTC-TCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 || | ||||| || || || | | || ||| | ||||| | |||||| ||| || Sbjct 545068 TTGGTGGGAATAGTTGTGTTACGTTTGATTAAG-GCAGTCATCACACCACCAGCAGTCTC 545010 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 | || ||||| || |||| || || | || | |||||||| ||| |||| Sbjct 545009 AATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGAAGGTCTTGCACATTTTCGGATTT 544950 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 |||||| ||| || || || || || | || || ||||| || || ||||| || || Sbjct 544949 GTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTCATCAGGATT 544890 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || |||| || || ||||| || ||||| | || | || | ||| || || || Sbjct 544889 TATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTTTTGGATCTTGGG 544830 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA-CTTTCGATTTATCGATCTTTG 7187 ||| || || || ||||| |||| ||| |||||||| | || || ||| || | ||| | Sbjct 544829 GATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATCTGTCC-TTTGTCTAGCTTAG 544771 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 || ||||| | || || |||||||| | | |||||| | || | || | Sbjct 544770 CATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAGCATTGAGCT 544711 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 ||||||| || ||||||||||| ||||| |||||||||| ||| || |||| || |||| Sbjct 544710 CCTCAAAGCGAGCACGGGTAATTGATGTGTAGAAATCAATGCCATCAAATAATGAGTCAA 544651 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 | ||||| | | || | | ||| | || || || || | ||||| || || | Sbjct 544650 TCTCAATAGAAGCCTGGGTGGAGGAACTCAGAGTACGTTTGGCTCTTTCACAGGCTGTGC 544591 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 | | || |||| || ||| ||| || | ||| || |||||| || || || || | Sbjct 544590 GGAGCCGTCGAACTGCTCGCTTGTTGCCAGCAATGTCACGCTTATGCTTGCGCTTGAATT 544531 Query 7428 CTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCC 7487 | || || || | | | | || || || || |||||||| || ||||| | Sbjct 544530 CCTCCACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCACCCAAATGGGTATCTC 544471 Query 7488 CCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACG 7547 | || || | ||| ||||||||||| || |||||||| | || | ||||||||||| | Sbjct 544470 CAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAATGGAAACATCAAATG 544411 Query 7548 TACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTAT 7601 | |||||||||| |||||| || || || ||| | || | || || || |||| Sbjct 544410 TGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTCTGCTCCCTTTTTTAT 544351 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGG 7660 | | ||| || || || || || ||||| || |||||||| || || || ||| || || Sbjct 544350 CCAAACCATAGGCAATGGCAGCAGCCGTGGGCTCATTAATGATGCGCAATACA-TTGAGA 544292 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || | ||| || | |||||||| || ||||| ||||| || || || ||||| || || Sbjct 544291 CCTGTAATGGTACCTGCATCTTTGGTGGCTTGGCGTTGGGAGTCATTGAAGTATGCAGGT 544232 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || | || || | |||||| ||| || || | || || || || |||||| Sbjct 544231 ACAGTAATTACAGCACTCTGGACTTTGCAACCCAGGTAAGCCTCGGCTATTTCCTTCATT 544172 Query 7781 TTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAA 7840 ||||| | ||||| || ||||| ||||||| || | || ||||| ||| | Sbjct 544171 TTGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGTTCTTGAGCTCACCCTTATAC 544112 Query 7841 TCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTC 7900 || |||| | | |||| || | |||| | | || | | ||| | ||| Sbjct 544111 TCGACTTGTACCTTGGGCTT---CCCAGCTTCACACACCACACGGAAAGGCCAGTGCTTC 544055 Query 7901 ATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAA 7960 |||||| || ||| |||| ||| || | || || |||||||| ||||| || Sbjct 544054 ATATCGGACTGCACCGTAGGGTCATCAAATTTGCGGCCAATGAGACGCTTGGCATCGAAG 543995 Query 7961 ACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCA 8020 | ||||| ||||| ||||| || ||| ||||| || || || ||||| || ||||| Sbjct 543994 ATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTAGCTGCATCTCCGATGAGGCGTTCC 543935 Query 8021 TTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATA 8080 || |||||||| || || || || || || || || ||||||||||| || ||| Sbjct 543934 GTA---TCCGTAAAGGCAACATAGCTCGGTGTAGTGCGGTTGCCTTGGTCGTTGGCGATA 543878 Query 8081 ATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATA 8140 || || || ||| || | || |||||||| || || || || || || ||||| Sbjct 543877 ATCTCCACTTTCCCGTGCTGGAAAACTCCGACGCAGGAGTATGTGGTGCCCAAGTCAATG 543818 Query 8141 CCGATTGC 8148 || || || Sbjct 543817 CCTATGGC 543810 >seq1449 Length=501666 Score = 201 bits (222), Expect = 1e-46 Identities = 372/542 (69%), Gaps = 4/542 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||||||||| || | || || |||||||| || || || Sbjct 414178 GCACCGTAGGCTACAGCTTCATCGGGGTTGATACTCTTGTTGAGTTCTTTGCCATTGAAG 414237 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | || || || || |||||||| || || || || |||| ||||| Sbjct 414238 AAATCCTGAAGGAGTTTCTGGATCTTGGGGATTCGGGTGGACCCGCCAACCAGCACGATA 414297 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | ||| | |||||||| | ||| | || || || | ||| || || || |||| Sbjct 414298 TCGTGCACCTGAGATTTATCTAGCTTGGCATCCCGCAGCGCTTTCTCCACGGGGTCCAGC 414357 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||||||| ||| || ||||| || || ||||| ||||| || ||| Sbjct 414358 GTGCCGCGGAACAAGTCGGCGTTCAGCTCTTCAAAGCGAGCTCGGGTGATGGAAGTGTAG 414417 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | ||| ||||| | || ||||||||||| | | || | | || || | Sbjct 414418 AAATCGATGCCCTCGTACAGGGAGTCAATTTCAATACTGGCCTGAGTGCTGGAGGACAGG 414477 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| || || || || | || || | ||||||| ||| || Sbjct 414478 GTGCGCTTCGCCCGCTCGCAGGCGGTGCGCAGGCGCCGGACGGCACGCTTGTTTTCGCTG 414537 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGA--AT 7457 || || ||||| || || || || ||||| ||| || | | || ||| || Sbjct 414538 ATGTCCTTCTTGTGCTTCCGCTTGAACTCGGTGATGAAATGGTTGACCA-TC-CGATTAT 414595 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| ||||| || |||||||| || || |||||||||| ||| ||||||||||| || Sbjct 414596 CGAAGTCTTCGCCCCCCAAGTGGGTGTCTCCCGCGGTCGATTTCACTTCAAAGATGCCGT 414655 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 |||| ||| | | | || || || || || || || ||||| || || || || |||| Sbjct 414656 CTTCGATGGTGAGGATGGAGACGTCGAAAGTTCCCCCTCCCAGATCGAAGATCAGCACGT 414715 Query 7578 TC 7579 || Sbjct 414716 TC 414717 >seq1687 Length=347344 Score = 136 bits (150), Expect = 5e-27 Identities = 234/337 (69%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| |||||||| || || ||||| ||||| || ||||| |||| || || || | || Sbjct 32151 CAGCTCCTCAAAGCGAGCCCGGGTGATGGAGGTGTAGAAGTCAATACCCTCATAGAGGGA 32210 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||||||||||| | || | | || | || ||||| || ||||| || || Sbjct 32211 GTCAATTTCAATGGAAGCCTGGGTGGAGGAGCTGAGGGTGCGCTTGGCCCGCTCGCAAGC 32270 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 ||| || | || || | ||| ||| || | | || || |||||||| || || || Sbjct 32271 CGTGCGCAGCCGCCGGACGGCCCGCTTATTGTCCGTGATGTCCTTCTTATGCTTGCGCTT 32330 Query 7423 AAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || ||| || | ||||| | | | || ||||| || ||||||| ||| | Sbjct 32331 GAATTCTGACACA-AAGTGGTTCACCATGCGATTGTCAAAATCCTCGCCACCCAGGTGAG 32389 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || |||| ||| ||||||||||| || | ||||| | | | || |||| Sbjct 32390 TGTCTCCAGCTGTCGATTTCACTTCAAAGATGCCATCCTCAATCGTCAGAATGGACACAT 32449 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||| || ||||||||||||||||||||||| || || Sbjct 32450 CAAAGGTGCCACCACCCAGGTCAAAAATGAGGACATT 32486 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| ||||| || || || || || ||||| || || || |||||| Sbjct 32943 TTTTTATCCAGACCATACGCAATGGCTGCTGCGGTGGGTTCGTTGATGATGCGAAGAACA 33002 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||||||||||||| || | |||||||| || ||||| || || || |||||||| || Sbjct 33003 TTCAGGCCAGCAATGGTGCCGGCATCTTTGGTGGCTTGCCGCTGAGAGTCGTTAAAATAA 33062 Query 7715 GCCGGGACCGT 7725 || ||||| || Sbjct 33063 GCTGGGACTGT 33073 >seq979 Length=614104 Score = 125 bits (138), Expect = 9e-24 Identities = 450/694 (65%), Gaps = 16/694 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || |||||||| || ||||| ||||| || |||||||||||||| || Sbjct 570882 TCAAAGTCCTCCCCGCCCAAGTGGGTGTCCCCTGCGGTGGCCTTGACTTCAAAGATGCCG 570941 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | ||||||||||| || || |||||||||||||||||||| | | Sbjct 570942 TCCTCCATGGAAAGGATAGAAACATCAAAGGTGCCCCCACCCAGGTCAAAAATGAGGATG 571001 Query 7577 -TTCG--TATCGTCGTCTTTGTTCTT---ATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 |||| | | | |||| ||| | ||| || ||||| || || || || || || Sbjct 571002 TTTCGGCTGCCAGCCTCTTGATTCCTGGCATCCAGGCCGTAGGCAATGGCAGCTGCTGTG 571061 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || ||||| | | || | ||||| ||||| | | ||||| | || || Sbjct 571062 GGCTCATTCAGGAGTTTTAGGATCTGGAGGCCCGCAATGACTCCAGCATCAATGGTGGCC 571121 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || || | ||| | |||||||| || ||||| |||| || | | ||| Sbjct 571122 TGCCGCTGGGCATCACTGAAGTAGGCGGGCACCGTGACGATGGCTTGGGAGACGGAGGAG 571181 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || || || | || || | | ||||| |||| || ||||| | || ||||| ||| Sbjct 571182 CCCAGGTAGGCCTCAGCTGTTTGCTTCATCTTGGCCAGGACCATGGCAGAGATCTCCTCA 571241 Query 7811 GCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC 7869 | | | | || | || ||| || |||| | | | | || ||| | Sbjct 571242 G-GGTAGAAGGTCCGCTGTTTACCTTTGTGGGAGACTTGGACCTTTAGCTTCTCC---TC 571297 Query 7870 ACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAA 7929 || | | || | | | ||| | |||||| || || || || ||| | | Sbjct 571298 ACGGCTCACCACAGTGAATGGCCAGTGTTTCATGTCCTCCTGTACAGCGGCATCCTCATA 571357 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| | || || || ||||| ||||| || || ||||| | |||||| | | | || Sbjct 571358 CTTGCGGCCAATCAGCCGCTTGGCATCGAACACCGTGTTCTGGGGGTTGAGAGAGGCCTG 571417 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 | |||| || | ||| || || || |||| | || || || || ||||| | ||| Sbjct 571418 GCTCTTGGCGGGGTCTCCAATCAGGTGTTCTGTGTT---GGTGAAGGCCACGTA-GCTGG 571473 Query 8050 G-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || || || ||||||||||| || || || || ||||| ||||| ||| |||||| Sbjct 571474 GTGTGGTCCGCTTCCCTTGGTCATTGGCGATGATCTCTACTTTGTCGTGTTGGCAGACGG 571533 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 | ||||| || | || ||||| | ||||| || Sbjct 571534 CCACGCAGGAGAAGGTGGTTCCAAGGTCAATCCC 571567 >seq6273 Length=24169 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| || || || ||||||||||| ||||| |||||||| || || || ||||||||||| Sbjct 19633 ATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCTCCAT 19574 Query 115122 AAAATCAAAGGGATT 115136 ||| ||||| ||||| Sbjct 19573 AAAGTCAAATGGATT 19559 >seq3926 Length=149525 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| || || || ||||||||||| ||||| |||||||| || || || ||||||||||| Sbjct 67342 ATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCTCCAT 67283 Query 115122 AAAATCAAAGGGATT 115136 ||| ||||| ||||| Sbjct 67282 AAAGTCAAATGGATT 67268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634717740715200