Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6273 120 3e-22 seq3926 120 3e-22 seq687 86.0 7e-12 >seq6273 Length=24169 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||||||||| || | || |||||||| |||| ||| | Sbjct 17689 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 17630 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 17629 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 17570 Query 19103 CAACTA 19108 | |||| Sbjct 17569 CTACTA 17564 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| ||||| ||||||||| || ||||| ||| || || || ||| || ||||| Sbjct 19696 TTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAG--GACTTGACATCACACCCATC 19639 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||| | || | ||||||||||| |||||||| || || | || ||| Sbjct 19638 CTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTC 19579 Query 18730 TCCATAAAATCAAATGGATT 18749 |||||||| ||||||||||| Sbjct 19578 TCCATAAAGTCAAATGGATT 19559 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| || | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 15357 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 15298 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||||||| Sbjct 15297 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 15253 >seq3926 Length=149525 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||||||||| || | || |||||||| |||| ||| | Sbjct 65420 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 65361 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 65360 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 65301 Query 19103 CAACTA 19108 | |||| Sbjct 65300 CTACTA 65295 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| ||||| ||||||||| || ||||| ||| || || || ||| || ||||| Sbjct 67405 TTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAG--GACTTGACATCACACCCATC 67348 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||| | || | ||||||||||| |||||||| || || | || ||| Sbjct 67347 CTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTC 67288 Query 18730 TCCATAAAATCAAATGGATT 18749 |||||||| ||||||||||| Sbjct 67287 TCCATAAAGTCAAATGGATT 67268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| || | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 62997 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 62938 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||||||| Sbjct 62937 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 62893 >seq687 Length=330907 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | || | ||||| || ||||||||||| || ||||||| ||||||||| | Sbjct 135915 ATCTTTGATGTAGGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGA 135974 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 |||||||| || || ||||| | ||||||| ||||| ||||| Sbjct 135975 TATCTGAAAGCCATAGAAACAGCGAGCTTCTGGGATCTGCACTTC 136019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| |||||||| |||||||||| || | || ||||| |||||||||||| | Sbjct 137808 ACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 137867 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATT-TTCTTTAAGAATAGGTTCC 19575 ||||| || || || || ||||||| || ||| ||| ||||| | ||||||| Sbjct 137868 TATTGGATTGGGAAGATGACAAATCGATGGGGATTCTTCCTTAAG-AGAGGTTCC 137921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561741461899200