Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq441 212 5e-49 seq1687 123 2e-22 seq4617 89.7 4e-12 seq1449 87.8 1e-11 >seq441 Length=576793 Score = 212 bits (234), Expect = 5e-49 Identities = 379/548 (69%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || ||||| || || || || |||||||| || || || |||| || | || ||| Sbjct 543810 GCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 543869 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| ||||| || ||||| ||| | ||||| || |||||| | || ||| Sbjct 543870 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 543929 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | || |||||||| || |||||| || ||||| | ||| Sbjct 543930 GATACGGAACGCCTCATCGGAGATGCAGCTAAGAATCAAGTGGCTATGAATCCCAACAAC 543989 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| || ||| | ||||| | | ||| |||| | || || ||| | Sbjct 543990 ACCATCTTCGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACCCTACGGTGCAGTCC 544049 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| |||||||||| | || || |||| || || | | ||| | Sbjct 544050 GATATGAAGCACTGGCCTTTCCGTGTGGTGTGTGAAGCTGGGAAGCCCAAGGTACAAGTC 544109 Query 550291 TACTCATGAAGGATCTGTTAAACAA-TTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || |||| | | | || || || | || ||| ||||||| |||||||| || | Sbjct 544110 GAGT-AT-AAGGGTGAGCTCAAGAACTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 544167 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 |||||||| ||| |||| |||| | ||| |||| | ||| ||||| | Sbjct 544168 CCAAAATGAAGGAAATAGCCGAGGCTTACCTGGGTTGCAAAGTCCAGAGTGCTGTAATTA 544227 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 ||||||| ||||| || |||||||| ||||| ||||| || |||||||| || ||| Sbjct 544228 CTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCAGGTACCATTA 544287 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || ||||| | || || || ||||| || || |||||||| |||| ||||| Sbjct 544288 CAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGGTT 544347 Query 550530 TTGATAAA 550537 | |||||| Sbjct 544348 TGGATAAA 544355 Score = 150 bits (166), Expect = 1e-30 Identities = 550/847 (65%), Gaps = 28/847 (3%) Strand=Plus/Plus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 |||||||| ||||| || | ||||| ||||||| | ||| | ||||| || || Sbjct 544437 GAAGATGGCATCTTTGAAGTGAAATCTACTGCTGGAGATACCCATTTGGGTGGGGAGGAC 544496 Query 551817 TTTGATAATAGACTGGTAT--CATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTG 551874 ||||| ||| | |||| ||| |||| || || || || || || | || || Sbjct 544497 TTTGACAATCGCATGGTGAGCCATTTTGTG--GAGGAATTCAAGCGCAAGCATAAGCGTG 544554 Query 551875 ATCTATCTA-CATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAA 551933 | | || || | | | || |||| || || | || || || |||||||||||| Sbjct 544555 ACATTGCTGGCAACAAGCGA-GCAGTTCGACGGCTCCGCACAGCCTGTGAAAGAGCCAAA 544613 Query 551934 CGAGCTCT---TTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGA 551990 || |||| ||| || || || | ||||||| | || ||||||||||| || Sbjct 544614 CGTACTCTGAGTTCCTCC---ACCCAGGCTTCTATTGAGATTGACTCATTATTTGATGGC 544670 Query 551991 ATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTT 552050 ||||||| | || | ||| | | || ||||| || | | |||||||||| Sbjct 544671 ATTGATTTCTACACATCAATTACCCGTGCTCGCTTTGAGGAGCTCAATGCTGATCTCTTC 544730 Query 552051 AGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAA-TCCAA 552109 | || ||||||| || || | | | | | ||| | ||| | || ||| || Sbjct 544731 CGTGGTACTCTTGAACCTGTGGAGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAG 544790 Query 552110 AGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT 552169 | || |||||||||| || |||||||| || || | || || || || | ||| ||| Sbjct 544791 ATTA-ATGAAATTGTTCTGGTTGGTGGCTCAACTCGTATCCCCAAGAT---CCAAAAGTT 544846 Query 552170 -----AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCT 552224 ||| ||| ||| ||||| ||| | |||| |||| | ||||| ||||| ||| Sbjct 544847 GCTCCAAG-ACTTCTTT-AATGGAAAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCT 544904 Query 552225 GTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTCTGGACAAACTGATGAAAAAC 552282 || || |||||||| || | || || |||||||| | |||||| ||||| Sbjct 544905 GTGGCATATGGTGCTGCTGTGCAGGCTGCTATTCTAATGGGTGACAAA--TCCGAAAATG 544962 Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 | ||| | || | || | ||||| | || || ||||| ||| | || || | ||| | Sbjct 544963 TGCAAGACCTTCTGCTGCTTGATGTAGCACCACTTTCTCTGGGTATTGAGACTGCTGGTG 545022 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 || | |||||| | ||| | | || || |||||||| || || | | | Sbjct 545023 GTGTGATGACTGCCTTAATCAAACGTAACACAACTATTCCCACCAAGCAAACCCAGACTT 545082 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || |||||||| ||||| | | ||| | ||| | | ||| || || ||| Sbjct 545083 TCACCACCTATTCAGACAATCAGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAG 545142 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | || || || ||||||| || || | ||| | | |||||||| ||||| | Sbjct 545143 CCATGACCAAGGACAATAATCTGCTGGGCAAGTTTGACCTGACGGGTATTCCACCTGCAC 545202 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 ||||||| || || |||||||| || || || || || ||||| ||||| || | |||| Sbjct 545203 CTCGTGGTGTGCCCCAAATTGAGGTGACGTTTGACATTGATGCAAATGGTATCCTCAATG 545262 Query 552583 TGACTGC 552589 | ||||| Sbjct 545263 TTACTGC 545269 >seq1687 Length=347344 Score = 123 bits (136), Expect = 2e-22 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| |||||||||| || || ||||| |||||||| ||||| || || ||||| || | Sbjct 33090 TTACCAATGCAGTAATCACAGTCCCAGCTTATTTTAACGACTCTCAGCGGCAAGCCACCA 33031 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 ||||||| || |||||||| || ||||||||||| || ||||| ||||| || || | Sbjct 33030 AAGATGCCGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAACGAACCCACCGCAG 32971 Query 550512 CTGCACTTGCATATGGACTTGATAAA 550537 | || |||| ||||| || |||||| Sbjct 32970 CAGCCATTGCGTATGGTCTGGATAAA 32945 >seq4617 Length=95303 Score = 89.7 bits (98), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| |||||||| |||||||| ||||| |||||| || ||||| || | || || Sbjct 85556 CCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGT 85497 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || || ||||| || || || || ||||||||||||||||| || Sbjct 85496 GCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCC 85437 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 ||| || || || || || || || |||||| || ||| || | | || || | Sbjct 85436 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTG-GGTTCCACCTCCA 85378 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || ||||| | || || || || || ||||| Sbjct 85377 GGGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 85335 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| |||||||| ||||| ||| | ||| || ||||| || | || Sbjct 85328 CCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGG 85271 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || ||||| || || || || ||||||||||||||||| Sbjct 85270 GTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCAGGAGGAATG 85211 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| ||||| || || || || || |||||| || ||| || | | || || Sbjct 85210 CCTTCCTTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTG-GGCTCCACCTC 85152 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| | || || || || || ||||| Sbjct 85151 CAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 85107 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | ||| || ||||| || | || Sbjct 86240 CCTCAGACGTAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGG 86183 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| | ||||| |||||||| || || || ||||||||||||||||| Sbjct 86182 GTGCGGCCATCTTCCAACTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATG 86123 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| ||||| || || || || || |||||| || ||| || | | || || Sbjct 86122 CCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTG-GGTTCCACCTC 86064 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| | || || || || || ||||| Sbjct 86063 CAGGGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 86019 Score = 86.0 bits (94), Expect = 5e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || |||||||| |||||||| ||||| ||| | ||| || ||||| || | || | Sbjct 86923 CTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGGG 86866 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || || || ||||| || || ||||| ||||||||||||||||| | Sbjct 86865 TGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCAGGAGGAATGC 86806 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTCG 563430 |||| || || || || || || || ||||| || ||| || | ||| || Sbjct 86805 CTTCCTTGTCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCACTGGGTTCTAC-CTCC 86747 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| | ||| || || || || ||||| Sbjct 86746 AGGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 86703 >seq1449 Length=501666 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| || |||||||| | ||| |||| || || ||| Sbjct 416059 GGGATTGATCTGGGCACCACCTATTCCTGCGTTGGTGTCTTCCAACATGGCAAGGTGGAA 416000 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || |||||||| ||||| ||| || || | ||||| || || Sbjct 415999 ATCATTGCCAATGACCAGGGTAACAGGACTACGCCAAGCTACGTGGCATTCACAGATACC 415940 Query 550118 GA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || | | | | |||||||||| ||||| | |||| Sbjct 415939 GAGAGACTGA-TTGGTGATGCTGCAAAGAACCAAG 415906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026531197817200