Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq6273 138 1e-27 seq3926 138 1e-27 seq687 102 1e-16 >seq6273 Length=24169 Score = 138 bits (152), Expect = 1e-27 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| ||||||||||| || | ||| ||||| | ||||| ||| || Sbjct 17687 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 17628 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| | ||||||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 17627 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 17568 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 17567 ACTACACGT 17559 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 36825 TTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCCCA 36882 ||||| |||||| |||| || || ||| |||| | | | ||| ||| || |||| Sbjct 19698 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC--AGGACTTGACATCACACCCA 19641 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 | ||||||||||||| || || |||| || || || || || ||||| || || |||| Sbjct 19640 TCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATAT 19581 Query 36943 TTTCCATAAAATCAAATGGATT 36964 | |||||||| ||||||||||| Sbjct 19580 TCTCCATAAAGTCAAATGGATT 19559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 15366 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 15307 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 15306 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 15268 >seq3926 Length=149525 Score = 138 bits (152), Expect = 1e-27 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| ||||||||||| || | ||| ||||| | ||||| ||| || Sbjct 65418 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 65359 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| | ||||||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 65358 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 65299 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 65298 ACTACACGT 65290 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 36825 TTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCCCA 36882 ||||| |||||| |||| || || ||| |||| | | | ||| ||| || |||| Sbjct 67407 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC--AGGACTTGACATCACACCCA 67350 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 | ||||||||||||| || || |||| || || || || || ||||| || || |||| Sbjct 67349 TCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATAT 67290 Query 36943 TTTCCATAAAATCAAATGGATT 36964 | |||||||| ||||||||||| Sbjct 67289 TCTCCATAAAGTCAAATGGATT 67268 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 63006 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 62947 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 62946 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 62908 >seq687 Length=330907 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| || || || | ||||||||||| ||||| || | Sbjct 133838 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 133897 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| |||||||||| ||||| ||||| || ||||| || || || || | Sbjct 133898 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACG 133957 Query 37318 CTAC 37321 | || Sbjct 133958 CAAC 133961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591929720971200