Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq598 143 5e-29 seq23989 131 3e-25 seq3825 131 3e-25 seq317 118 2e-21 seq2150 104 4e-17 >seq598 Length=840564 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || || | ||| || || || || |||||||| | Sbjct 292865 GCTGGCAGCCGTTGTTCACGTGGTTCATTACTTTCTGCTTCAGCTGCGCTACCTGGTCTC 292924 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || || |||||||| ||||| || ||| | |||||| || | Sbjct 292925 GGAGCGCGCTGGCAGTGTTAGACAGTCCCGCGTTCTCGTTCTTTAAGCTCTTCACCTTGT 292984 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | |||||||||||||| |||| ||||| Sbjct 292985 CCTCCAGCCGAGCGATGCGCTCCAGCTTCCTCTTCCGGCATTTGGTGGCGGCCAGGCGGT 293044 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | ||| | ||| |||||||||| ||||| || ||||||| || |||||| Sbjct 293045 TGCGCAGCCGCTTCCTCTCCACCTTGATGCGCTCCTGATCTTCCATGTTAATGGGAGAC 293103 >seq23989 Length=2047 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 ||| |||| ||||||||||||||||| | |||||| || |||||| ||||||||||| Sbjct 778 CCTCTGCTGACGGGGCTGCCCTGGTAGGTCTGGTAGGGCCCCTGCTCCCTGGCCAGCTCG 719 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| ||| || |||||||||||| || || |||| | |||||| || | Sbjct 718 CAGCTGGCCTCCAGCGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGAGGCGCTGG 659 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 |||| ||| | |||||| | |||| | ||| | || ||||| ||||| ||| Sbjct 658 GCCTGAGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACC 599 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||||||||| | || | | |||| || Sbjct 598 CCGATGCCGATGGGGCGATGGCGCCGGTTGGA 567 >seq3825 Length=175568 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 ||| |||| ||||||||||||||||| | |||||| || |||||| ||||||||||| Sbjct 105358 CCTCTGCTGACGGGGCTGCCCTGGTAGGTCTGGTAGGGCCCCTGCTCCCTGGCCAGCTCG 105299 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| ||| || |||||||||||| || || |||| | |||||| || | Sbjct 105298 CAGCTGGCCTCCAGCGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGAGGCGCTGG 105239 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 |||| ||| | |||||| | |||| | ||| | || ||||| ||||| ||| Sbjct 105238 GCCTGGGGGCTCTCGAAGGGGAAGCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACC 105179 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||||||||| | || | | |||| || Sbjct 105178 CCGATGCCGATGGGGCGATGGCGCCGGTTGGA 105147 Score = 111 bits (122), Expect = 3e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| || ||||||| ||| |||||| ||| ||||||| || |||| ||| || Sbjct 100597 CTTCATGAAGAGATCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCTTC 100538 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || | ||| || ||| || || || |||||||||||| |||||| ||||||| Sbjct 100537 CTTCCCGGTGTTCTTCTTCAGGTCAAGGAAATCAAAGATGTCCAAGTGCCAGGGCTCCAG 100478 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTGCCG 213968 ||||||||| ||||| || || ||| ||||| Sbjct 100477 GTAGATGGCGAAGGCCCCGGGTCTC-TGCCG 100448 Score = 104 bits (114), Expect = 4e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 212690 ATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTAT 212749 ||| | |||||| ||||| |||||||| ||||| | ||| |||||||||||| | | Sbjct 110476 ATGGATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAG 110417 Query 212750 GATA-TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGA 212808 ||| ||| ||||||||| ||||||||| |||||| ||| | || |||||||| |||| Sbjct 110416 GATGGTCT-TCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTCGGGGA 110358 Query 212809 AGCCGGGGATGTTCTG 212824 | ||||||||||| Sbjct 110357 TCTCCGGGATGTTCTG 110342 >seq317 Length=6916597 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| ||||| || | | || || || |||| Sbjct 2927466 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGGAGGAGGTTGGCCGTCGAGGCCAGT 2927525 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||| ||||| || ||||| || | |||||| ||||| Sbjct 2927526 TCGGTGTTCTGGTTCTTGAGGCTCTTGACTTTTTCTTCCAGGCGGGAGATGCGCTCCAGC 2927585 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||||| || || |||| ||| || | |||||| || || | ||| || || |||||| Sbjct 2927586 TTCCGCCGCCGACACTTGGAGGCCGCGATGCGGTTGCGCAGCCGCTTGCGCTCGGCCTTG 2927645 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 2927646 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 2927678 >seq2150 Length=294367 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| | || |||| | ||||| || || | | ||||| | Sbjct 219866 AGCTGGGTGACCTGGACGCGGAGAAGGCTGGCGGTGGCGGCCAATTCGGCGTTTTGCCCT 219807 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | || ||||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 219806 TTGAGCGCTTTGACTTTCTCCTCCAAGCGGGCGATGCGCTCCAGCTTGCGCCGGCGGCAC 219747 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| || || | ||||| || || || || || ||||| || | ||| || ||| | Sbjct 219746 TTGGAAGCGGCGATCCGGTTGCGCAGCCTTTTGCGCTCCGCTTTCAGGCGCTCTTGGCTC 219687 Query 241610 TCCATGTCGATCGGAGA 241626 ||| ||| | ||| || Sbjct 219686 TCCGCGTCCAGCGGCGA 219670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930924043315200