Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq526 215 6e-51 >seq526 Length=780384 Score = 215 bits (238), Expect = 6e-51 Identities = 649/994 (65%), Gaps = 15/994 (2%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||| ||| | |||||| |||| ||| || | || || ||||| || || || | Sbjct 576735 TGTCTCGTAAATGTTCTTCCAAACACTGAATTGCAAAAGGATCAACATCAGTATCAAACT 576676 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||| || ||| ||| |||||| || ||||||| || || | Sbjct 576675 TGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGACTCCAAAGA 576619 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | ||| || || |||||||| ||||| |||| || || | || | Sbjct 576618 CACATACAGAACGGACGTGAACTCCATTGCAAGGGGGGTAAGGAGCACCCTTGGATACAT 576559 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || |||| |||||||||||||||| ||| | || | ||| ||||| |||| Sbjct 576558 CCCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAACTGCATTCATATCGGAAACATCGT 576499 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 ||||| || | ||| ||||||| |||||| | || || ||||| | || ||||| Sbjct 576498 ATTTG-CCACTGGCGGAGACGGCACTGGGAACTTCAGGGATTCGCTGAATTGTTGCCCAT 576440 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || || ||||| ||||| |||| |||||| || || | ||| || Sbjct 576439 AAGTATTCATCAGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAATTTTGCTA 576380 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | | | || | || | || ||||| || || || || ||||| Sbjct 576379 TTCTCTAATATATATTCCACAAACTTCCTACTAACAACAAAATAGGCACTTCCAGAGAAA 576320 Query 160464 ATCGGTATGGGTATAGGCGGCGTG-TCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || ||| || | ||| || ||| | |||||| || ||||| | | || | Sbjct 576319 ATGGGTGTGTTGAGAGGTGG-GTGCTGTTTGTCTATCCCTGTGTTTTTTATCTTGCCATC 576261 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | |||| | ||||||||||| ||| |||| | ||||| |||||| || Sbjct 576260 AATTACTTCGTGATGTTTCTTCCACCTCACCTCTTTGTTTGAAGGCATTTTTTCCGTTTC 576201 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 || || || |||||| ||| | ||||| || || || || ||| | || ||||||| Sbjct 576200 TAAGCTATTTTCACCGTTGAGGGCTTTCAACTTCTCCACTATTTCTTGATTGGTCTTGAT 576141 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 || || || ||||||| | || || | ||||||||| || | ||| | || Sbjct 576140 TGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCATCCTATAGAG 576081 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 ||| ||||||| || | || || || || |||||||| || || |||||||| | || Sbjct 576080 ATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACACTACACTTTC 576021 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCC-A 160818 | || ||||| | ||||| |||| ||||| || | || || || | ||| | Sbjct 576020 CAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCTTTTACAGCTGCCAA 575961 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 |||||| || | |||| ||| || || | ||| || ||||||||| | | Sbjct 575960 GAAAGA----CTCTGGGGACTTTTTGTCAACATGAATGCAGTAATAGTTCTGAGGAACAT 575905 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 | ||| || || | ||||| | ||| | || ||||||| ||| || || || | Sbjct 575904 ATATGATTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACTATTGAATATG 575845 Query 160939 CTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGA 160998 | || ||||| || | || || | || || | | | | || |||||| |||| | Sbjct 575844 CAATGGGAAATTCTGCTTCTTCTTGGCTAAGAGGTTCCATAATATATTTTCGCTTCTTAA 575785 Query 160999 TAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| | | ||||| |||||||||||||| Sbjct 575784 TAAAGGAGGCGCAATCAATTGTCATGTTGATATA 575751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576841987252800