Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq39 91.5 3e-13 seq4804 86.0 1e-11 seq687 84.2 4e-11 >seq39 Length=347859 Score = 91.5 bits (100), Expect = 3e-13 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357 ||||||| || ||||| || ||||| | || | || | ||| | ||| || ||| Sbjct 5387 AGTTTAAAAA--CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATG 5444 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || || || | ||| || |||| |||| ||||| ||||||||||| | ||||| Sbjct 5445 TTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGC 5504 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || || || || || ||||| || || || || || || || || || | || Sbjct 5505 TGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCA 5564 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| || || ||||| |||||||| ||||| || || || | ||| |||||||| Sbjct 5565 CTGGGTTCCACCTCAAGAGTTATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5623 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | || | ||| | ||| || ||| || || || Sbjct 5850 ATCCCACCTCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 5909 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||| ||||||||||| | ||||||||||| || Sbjct 5910 GAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGA 5969 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || || || || | || | ||| Sbjct 5970 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCC 6029 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| || || || || || | ||| |||||||| Sbjct 6030 ACCTCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCAT 6079 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | ||| | || | ||| || ||| || || || Sbjct 6990 ATCCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 7049 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||| || |||||||| | ||||||||||| || Sbjct 7050 GAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCGGGA 7109 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || || || || | || | ||| Sbjct 7110 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCC 7169 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || |||||||| || || || || || | ||| |||||||| Sbjct 7170 ACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 7219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || | ||| | || | ||| || ||| || || || Sbjct 6762 ATGCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCT 6821 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||| ||||||||||| | ||||| || || || Sbjct 6822 GAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGA 6881 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || | ||| Sbjct 6882 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCC 6941 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| || || || | ||| |||||||| Sbjct 6942 ACCTCAAGAGTTATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6991 >seq4804 Length=43647 Score = 86.0 bits (94), Expect = 1e-11 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357 ||||||| || ||||| || ||||| | || | || | ||| | ||| || ||| Sbjct 5501 AGTTTAAAAA--CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATG 5444 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || || || | || || |||| |||| ||||| ||||||||||| | |||||| Sbjct 5443 TTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGT 5384 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| || || || ||||| || || || || || || || || || | || Sbjct 5383 TGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCA 5324 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| || || || || |||||||| || || || || || | ||| |||||||| Sbjct 5323 CTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 5265 >seq687 Length=330907 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 49860 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 49919 |||| |||||| ||||| | ||||||||||| |||||||| || ||||||||||| Sbjct 133852 ATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTGAGCCAAAATATG 133911 Query 49920 GATGCAAAACTACTAGAAAAGAATATACCCTCGACA 49955 | ||||||| || ||| ||||| || || |||||| Sbjct 133912 GCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACA 133947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983820558378000