Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 174 2e-37 seq3069 165 1e-34 seq1876 156 5e-32 seq1259 120 4e-21 seq4230 116 5e-20 seq2344 107 2e-17 seq3825 100 3e-15 >seq7 Length=116306 Score = 174 bits (192), Expect = 2e-37 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 94497 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 94556 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| | ||||||| |||| | Sbjct 94557 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 94616 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 94617 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 94676 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||||||||||| Sbjct 94677 GGACCTGCTTGAGCACCTTGTAGA 94700 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| ||||||| |||||| | | || Sbjct 83148 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGACCTCGCGGGAGGTGA 83089 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 83088 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 83029 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 83028 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 82969 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 82968 GGACCTGCTTCAGCACCTTGTAGA 82945 Score = 104 bits (114), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 93293 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 93352 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 93353 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 93412 Query 1254463 TGTCGTTGAC 1254472 |||||||||| Sbjct 93413 TGTCGTTGAC 93422 Score = 104 bits (114), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 112021 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 111962 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 111961 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 111902 Query 1254463 TGTCGTTGAC 1254472 |||||||||| Sbjct 111901 TGTCGTTGAC 111892 >seq3069 Length=342711 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||||||||| |||||||||||||| | | || Sbjct 147429 GCTTGGCCAGCTCGCCCGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGA 147370 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||||| ||||||| |||| | Sbjct 147369 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGGCCGCGATGCGCTCGAAAA 147310 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 147309 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCGGGGT 147250 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 147249 GGACCTGCTTCAGCACCTTGTAGA 147226 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||||||||| |||||||||||||| | | || Sbjct 154545 GCTTGGCCAGCTCGCCCGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGA 154486 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||||| ||||||| |||| | Sbjct 154485 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGGCCGCGATGCGCTCGAAGA 154426 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 154425 TGTCATTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 154366 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 154365 GGACCTGCTTCAGCACCTTGTAGA 154342 >seq1876 Length=124320 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| |||| | || Sbjct 31845 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 31904 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| ||| ||||| ||||||| |||| | Sbjct 31905 TGGTCGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGA 31964 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 31965 TGTCGTTCACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 32024 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 32025 GGACCTGCTTCAGCACCTTGTAGA 32048 Score = 152 bits (168), Expect = 6e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| ||| | ||||||||||| ||||||||||| |||| | ||| || Sbjct 43943 GCCAATTCCCCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTC 43884 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||| ||| ||||| ||||||| |||| |||||| Sbjct 43883 GAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGATGTCG 43824 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||||||||||| ||| | |||| ||||||||| ||||||||| ||| Sbjct 43823 TTCACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACC 43764 Query 1254528 TGCTTGAGCACCTTGTAGA 1254546 ||||| ||||||||||||| Sbjct 43763 TGCTTCAGCACCTTGTAGA 43745 >seq1259 Length=427630 Score = 120 bits (132), Expect = 4e-21 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 28099 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 28040 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 28039 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 27980 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| || |||||||||| Sbjct 27979 TGTCGTTGACGAAGGAGTTCATGA 27956 >seq4230 Length=173914 Score = 116 bits (128), Expect = 5e-20 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||||| || || ||||||||||| || | | || Sbjct 52916 GCTTGGCCAGCTCTCCTGGCAGAAGGAGGCGGACAGCCGTCTGGATCTCACGGGAGGTGA 52975 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| |||| ||| |||||| | ||||| |||| | Sbjct 52976 TAGTGGAGCGCTTGTTGTAGTGGGCCAAGCGGGAGGCCTCTCCAGCTATGCGCTCGAAGA 53035 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || |||||||| || ||||| | ||| | |||| |||||||| ||| |||| Sbjct 53036 TATCATTGACAAAGGAATTCATAATGCTCATGGCCTTGGATGAGATGCCGGTGTCAGGGT 53095 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 53096 GGACCTGCTTAAGCACCTTGTAGA 53119 >seq2344 Length=125384 Score = 107 bits (118), Expect = 2e-17 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 ||||||||||||||||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 121790 CGTCATCTCCTTTGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 121849 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| ||| ||||| || ||||| ||||||| |||||| |||||||| Sbjct 121850 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGGCACGGCGTCAACCGC 121901 >seq3825 Length=175568 Score = 100 bits (110), Expect = 3e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||| || || || |||||||||||||| ||||| || || |||||||||| Sbjct 99155 CGGCCACCCCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTGCTTCAGCGTGTCGT 99096 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||||||||| |||| |||||||| | ||||||||| Sbjct 99095 AGATGCCCTCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCA 99053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102848858372760