Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 233 3e-55 seq3069 224 2e-52 seq1876 192 9e-43 seq1259 183 5e-40 seq4230 174 2e-37 seq2344 111 2e-18 seq3825 87.8 3e-11 >seq7 Length=116306 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 94458 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 94517 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 94518 GGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 94577 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 94578 GGGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 94637 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| ||||||||||||||||||| Sbjct 94638 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGGACCTGCTTGAGCACCTTGT 94697 Query 1485710 AAAC 1485713 | || Sbjct 94698 AGAC 94701 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 83187 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 83128 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| ||||||| |||||||| | ||| ||| ||||||||| | Sbjct 83127 GGAGGAGGCGGACGGCCGTCTGGACCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 83068 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 83067 GGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 83008 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 83007 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 82948 Query 1485710 AAAC 1485713 | || Sbjct 82947 AGAC 82944 Score = 165 bits (182), Expect = 1e-34 Identities = 138/169 (82%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 93254 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 93313 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 93314 GGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 93373 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 | ||||||||| |||||||| ||||||| |||| ||||||||||| Sbjct 93374 GGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGAC 93422 Score = 165 bits (182), Expect = 1e-34 Identities = 138/169 (82%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 112060 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 112001 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 112000 GGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 111941 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 | ||||||||| |||||||| ||||||| |||| ||||||||||| Sbjct 111940 GGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGAC 111892 >seq3069 Length=342711 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 147468 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGCA 147409 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 147408 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 147349 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 147348 GGGCCAGGCGGGACGCCTCGGCCGCGATGCGCTCGAAAATGTCGTTGACGAAGGAGTTCA 147289 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||||||||| |||||||| |||||||||| Sbjct 147288 TGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 147229 Query 1485710 AAAC 1485713 | || Sbjct 147228 AGAC 147225 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 154584 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGCA 154525 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 154524 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 154465 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| ||||||| |||| ||||| ||||| || ||||||| Sbjct 154464 GGGCCAGGCGGGACGCCTCGGCCGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCA 154405 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 154404 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 154345 Query 1485710 AAAC 1485713 | || Sbjct 154344 AGAC 154341 >seq1876 Length=124320 Score = 192 bits (212), Expect = 9e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| || || || ||||||||| ||||||| || ||| ||| Sbjct 31806 TGTATTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 31865 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 31866 GCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 31925 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| ||||||| |||| |||||||| || |||||||||| Sbjct 31926 GGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 31985 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 31986 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 32045 Query 1485710 AAAC 1485713 | || Sbjct 32046 AGAC 32049 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| || || || ||||||||| | |||| ||| ||| ||| Sbjct 43987 TGTATTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGCTTAGCCAATTCCCCGGGCA 43928 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 43927 GCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 43868 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| ||||||| |||| |||||||| || |||||||||| Sbjct 43867 GGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 43808 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 43807 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 43748 Query 1485710 AAAC 1485713 | || Sbjct 43747 AGAC 43744 >seq1259 Length=427630 Score = 183 bits (202), Expect = 5e-40 Identities = 151/184 (82%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 28138 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 28079 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 28078 GGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 28019 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 28018 GGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 27959 Query 1485650 TGAT 1485653 |||| Sbjct 27958 TGAT 27955 >seq4230 Length=173914 Score = 174 bits (192), Expect = 2e-37 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 52877 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCTGGCA 52936 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| || || ||||||||||| |||| | ||| ||| ||||||||| | Sbjct 52937 GAAGGAGGCGGACAGCCGTCTGGATCTCACGGGAGGTGATAGTGGAGCGCTTGTTGTAGT 52996 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| |||||| | ||||| |||| || || |||||||| || |||| Sbjct 52997 GGGCCAAGCGGGAGGCCTCTCCAGCTATGCGCTCGAAGATATCATTGACAAAGGAATTCA 53056 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| |||||||| ||| ||||| |||||||| |||||||||| Sbjct 53057 TAATGCTCATGGCCTTGGATGAGATGCCGGTGTCAGGGTGGACCTGCTTAAGCACCTTGT 53116 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 53117 AGACATAGATGGAGTA 53132 >seq2344 Length=125384 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| ||||||||||||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 121790 CGTCATCTCCTTTGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 121849 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||||||||| || ||||| |||||||||||||| ||||||| Sbjct 121850 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGGCACGGCGTCAACCG 121900 >seq3825 Length=175568 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | ||||| || || || | |||||||||||| ||||| | |||||||| |||| Sbjct 99155 CGGCCACCCCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTGCTTCAGCGTGTCGT 99096 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||||||||| |||| |||||||| | |||||||| Sbjct 99095 AGATGCCCTCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCA 99053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910685137950920