Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq441 414 7e-110 seq312 109 4e-18 seq1687 107 1e-17 seq1449 102 6e-16 seq353 95.1 9e-14 seq3952 91.5 1e-12 seq2029 89.7 4e-12 seq2170 87.8 1e-11 >seq441 Length=576793 Score = 414 bits (458), Expect = 7e-110 Identities = 981/1463 (67%), Gaps = 28/1463 (2%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 |||||| || ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 545315 ATTAGTTATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAG 545256 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||| ||||| | ||||| || || |||||||| || || || | | ||||| Sbjct 545255 GATACCATTTGCATCAATGTCAAACGTCACCTCAATTTGGGGCACACCACGAGGTGCAGG 545196 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||| || || || | ||| | ||||| |||||| || || || | || || Sbjct 545195 TGGAATACCCGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTGGTCATGGCTCTCTC 545136 Query 281560 ACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 |||||| | | ||| | || | ||||| | ||||| |||||||| || || || | | Sbjct 545135 ACCCTCATACACTTGTACCAGCACACTAC--TCTGATTGTCTGAATAGGTGGTGAA-AGT 545079 Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 545078 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGTTTGATTAAGGCAGTCATCACACCACC 545019 Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 281736 ||| || || | ||| |||||||| || | ||||||| || | || | ||| | || Sbjct 545018 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGAAGGTCTTGCACATT 544959 Query 281737 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 ||| | | ||| | |||||||| || || | ||||||||||||||| |||||||| Sbjct 544958 TTCGGATTTGTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTC 544899 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTC 281855 ||||||||| | ||| ||||| | ||| ||||| || || | ||| | || || | Sbjct 544898 ATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTT-TT 544840 Query 281856 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 | ||| || ||||||| ||| || ||||| | |||||||||| | |||| ||| | Sbjct 544839 GGATCTTGGGGATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATCTGTCCTTTGT 544780 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975 | || || | ||| | | | || || || ||||||||| | | | || | || | Sbjct 544779 CTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAG 544720 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAA 282033 | || || || || ||| | ||| | ||| | || ||||||| || || || Sbjct 544719 CATTGAGCTCCTCAAAGCGAGCACGGGTA--ATTGATGTGTAGAAATCAATGCCATCAAA 544662 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 || || |||| ||||| | || || || || ||| || | |||||| || | ||| Sbjct 544661 TAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAACTCAGAGTACGTTTGGCTCTTTC 544602 Query 282094 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATAT 282151 ||| ||||| | || | ||| | || | ||| ||| | | || |||| Sbjct 544601 ACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATGC 544544 Query 282152 TTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTC 282209 || | |||||| || || |||| ||| | || | ||||| ||||| || || || | Sbjct 544543 TTGCGCTTGAATTCCTC--CACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCAC 544486 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | |||| ||| | |||| | | |||| || | |||||||||| | ||||| Sbjct 544485 CCAAATGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAA 544426 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTT 282323 | ||||||| || |||||||||| ||||| || || |||||| | | || Sbjct 544425 TGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTC 544366 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 || |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 544365 TGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCCGTGGGCTCATTAATGATGC 544306 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 ||| ||||| ||||| | ||| | ||||||||||| |||||||| | ||| || || | Sbjct 544305 GCAATACATTGAGACCTGTAATGGTACCTGCATCTTTGGTGGCTTGGCGTTGGGAGTCAT 544246 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 | || |||||||| |||||||| || ||| |||| |||| || | ||||| Sbjct 544245 TGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCAACCCAGGTAAGCCTCG 544187 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 ||| ||| |||||||| | || | ||| || ||||||| ||| ||| | | | |||| Sbjct 544186 GCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAAAGAAGTTCTTG 544127 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622 ||| | ||| |||| | | || || | | || | || || Sbjct 544126 AGCTCACCCTTATACTCGACTTGTACCTTGGGCTTCCCAGCTTCACACACCACACGGAAA 544067 Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682 ||||| | |||||||| || || || | |||||| ||| | | ||||| | || Sbjct 544066 GGCCAGTGCTTCATATCGGACTGCACCGTAGGGTCATCAAATTTGCGGCCAATGAGACGC 544007 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || ||||| || || || ||| | ||||| | || |||||| || ||||||||||| Sbjct 544006 TTGGCATCGAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTAGCTGCATCTCCG 543947 Query 282743 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802 || || |||| || || ||||| | |||||| || || ||||| || ||||| || Sbjct 543946 ATGAGGCGTTCCGTATCCGTAAAGGCAACATAGCTCGGTGTAGTGCGGTTGCCTTGGTCG 543887 Query 282803 TTCGCAATAATTTCAACTTTACC 282825 || || ||||| || ||||| || Sbjct 543886 TTGGCGATAATCTCCACTTTCCC 543864 >seq312 Length=6374073 Score = 109 bits (120), Expect = 4e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || ||||| || ||||||||||| |||||||||||||| ||| | ||| | ||||||||| Sbjct 4269239 AACTGTACGCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 4269180 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| | || || || | |||||||| || ||||| |||||||||||||||| || Sbjct 4269179 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAACTTTTGAACGTA 4269120 Query 400414 AGGGATGC 400421 |||| || Sbjct 4269119 CGGGAAGC 4269112 >seq1687 Length=347344 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| ||||||||||||| || || || || ||||| || || || | | |||| Sbjct 32943 TTTTTATCCAGACCATACGCAATGGCTGCTGCGGTGGGTTCGTTGATGATGCGAAGAACA 33002 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| | || |||||||| |||||||| | || || ||||||||||| Sbjct 33003 TTCAGGCCAGCAATGGTGCCGGCATCTTTGGTGGCTTGCCGCTGAGAGTCGTTAAAATAA 33062 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || || || |||| Sbjct 33063 GCTGGGACTGTGATTACTGCAT 33084 >seq1449 Length=501666 Score = 102 bits (112), Expect = 6e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||| || ||||| ||||||||||||| | ||| Sbjct 414860 TTTTTGTCCAAGCCATAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACA 414919 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 414920 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAA 414979 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || | ||||||| ||| || Sbjct 414980 GCTGGGACTGTGACCACGGCATTTGTAAC 415008 >seq353 Length=2866884 Score = 95.1 bits (104), Expect = 9e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| ||||||| || ||||||||||| || ||| | || ||| | ||||| | | Sbjct 1110451 TGTACATTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTAGGT 1110392 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||||||||||||||| ||||| ||||| ||||| || |||||| || | |||||| | Sbjct 1110391 GTTATTGGAAGAGATAGATATGGGGTTTTTCCACTCAGGGGAAAAATTCTTAATGTTCGT 1110332 Query 400417 GATGC 400421 || || Sbjct 1110331 GAGGC 1110327 >seq3952 Length=275151 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| ||||||| || ||||||||||| || ||| | || ||| | ||||| | | Sbjct 137620 TGTACGTTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTGGGT 137561 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||||||||||||||| ||||| || || ||||| || |||||| || | |||||| | Sbjct 137560 GTTATTGGAAGAGATAGATATGGGGTATTTCCACTCAGGGGAAAAATTCTTAATGTTCGT 137501 Query 400417 GATGC 400421 || || Sbjct 137500 GAGGC 137496 >seq2029 Length=428850 Score = 89.7 bits (98), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 1079027 AAGAATCATTGAATTAGAAACGTATCCAAAATTTTCGTATTGTTTCATTGCACACGACAA 1079086 ||| | ||| ||||||| || | |||| | ||| | |||||| ||| | || || Sbjct 272971 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 272912 Query 1079087 ATTAATCAAATTCCAAGCAATAATTCCGGGTCTACCATTAAAAAACAGTTTCAAATCA-- 1079144 |||||||||| |||| | | |||||| |||| ||||||||||||| ||| |||||| Sbjct 272911 ATTAATCAAAGTCCATCCTAAAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 272852 Query 1079145 ----GTTCCAAATATTTCAGGATTAAATTCAATACCCATAACAATATCATAAAATAATTT 1079200 |||| || | |||||||||||||| ||||| | | | ||| || || || Sbjct 272851 CCACTTTCCCAAGCGT---GGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAATT 272795 Query 1079201 TCCTGTAAATTT 1079212 || || ||||| Sbjct 272794 GCCAGTGAATTT 272783 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1078899 GGAAGCCAAACAGTATCACCCCAAGCCAACATCCATCCAAAATGATCATGAGCAATATCT 1078958 |||||||||||| || ||||| |||| ||||||||| ||||||||||||||||| Sbjct 279101 GGAAGCCAAACACAGTCTCCCCAGGCCAGATACCATCCAAAGTGATCATGAGCAATATCC 279042 Query 1078959 ACAGTGTGAACATACCAATTTTCATTATaaaaaaaaTCAACAATATA 1079005 | || | | ||||||| ||||||| ||||||| || | || ||| Sbjct 279041 ATTGTTTTTAAATACCAAGTTTCATTCCAAAAAAAGTCCAGAACATA 278995 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1078899 GGAAGCCAAACAGTATCACCCCAAGCCAACATCCATCCAAAATGATCATGAGCAATATCT 1078958 |||||||||||| || ||||| |||| ||||||||| ||||||||||||||||| Sbjct 311750 GGAAGCCAAACACAGTCTCCCCAGGCCAGATACCATCCAAAGTGATCATGAGCAATATCC 311691 Query 1078959 ACAGTGTGAACATACCAATTTTCATTATaaaaaaaaTCAACAATATA 1079005 | || | | ||||||| ||||||| ||||||| || | || ||| Sbjct 311690 ATTGTTTTTAAATACCAAGTTTCATTCCAAAAAAAGTCCAGAACATA 311644 >seq2170 Length=193264 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 85340 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 85281 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 85280 CTCTCAAAACATTCAACCCAGCAATCTGTCCAGCATCTTTAGTGGC 85235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738063672935280