Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq1882 98.7 9e-16 >seq1882 Length=123136 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 21121 TTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACT 21180 || ||| || ||||| || | || |||||| | ||| | |||||| |||| |||| || Sbjct 72845 TTGTAGTATATGGGGACCAACTTGTGATGGCCTTGATCGTATTGTTGAGCGTTGTGGCCT 72786 Query 21181 GCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGT 21240 ||||| ||||| || || || ||| | | |||||||||||||| || || | || | Sbjct 72785 ACCAGAACTTCAGGTTGGGGATTGGATGCTGTTTGAAAACATGGGAGCCTATA-CTGTGG 72727 Query 21241 CAGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 ||||| |||| ||||| || || || | || |||| || |||||||| || ||| Sbjct 72726 CAGCTGCTTCTACCTTCAATGGATTTCAAAGGCCAACAATACACTATGTAATGTCA 72671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463242672950400