Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq743 147 4e-30 >seq743 Length=534197 Score = 147 bits (162), Expect = 4e-30 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| |||| |||||||||||||| ||||| |||||||| || || | || ||| | Sbjct 156846 GATAGCAGGAGCTTTATGGTGGTACTACATATCCAAAGGGATTGAGTATCTGGACACAAT 156787 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || ||||| || || || || |||||||| | |||||||| || || ||||| ||||| Sbjct 156786 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTT 156727 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||||||||||||| | ||| | || || || ||| |||||||||| || Sbjct 156726 CACTATGTTTACTTTATGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACA 156676 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 |||||||| || ||||| ||||| |||| || |||||| ||||||| | |||||||| Sbjct 154879 GCATTTTTTGGAGCTCATATGAATGCTTTCATTCATGTTGTTATGTACATGTATTATGGA 154820 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | | ||| | |||||| | |||||||| || ||| | || ||| Sbjct 154819 CTAGCTGCCTGTGGCCCAAAGTTCCACAAGTATCTTTGGTGGAAACGATACTTGACCATA 154760 Query 58661 ATGCAATTGGTA 58672 |||||||| ||| Sbjct 154759 ATGCAATTAGTA 154748 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | || | || || |||| |||| ||||| || |||||||| || Sbjct 152894 GGTTCAGTTCCATTTGACTTTTGGCCACGCCGCCCTGTCTATTTATATTGATTGCCCCTT 152835 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 ||| | ||||| ||| ||| || || ||||| | | ||||| || | ||||||| Sbjct 152834 TCCTAGATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTATTCTGTTTGG 152775 Query 58789 TAACTTCTATTTTAGAACATACAAGA 58814 ||||||||| | | | |||||||||| Sbjct 152774 TAACTTCTACTATCGGACATACAAGA 152749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902820820780800