Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq526 149 7e-31 seq336 123 3e-23 seq3293 82.4 9e-11 >seq526 Length=780384 Score = 149 bits (164), Expect = 7e-31 Identities = 569/884 (64%), Gaps = 21/884 (2%) Strand=Plus/Minus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | ||||| ||| || ||||| | | || || Sbjct 576683 ATCAAACTTGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGAC 576627 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || ||||| || || |||| || || || | || || | Sbjct 576626 TCCAAAGACACATACAGAACGGACGTGAACTCCATTGCAAGGGGGGTAAGGAGCACCCTT 576567 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||||||||| |||| |||||||| || |||| | | || | ||| ||||| Sbjct 576566 GGATACATCCCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAACTGCATTCATATCGGA 576507 Query 162300 GGTGTCGTACTTGTACACTGACGGC-ACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||||| ||| ||||| ||| ||||| | ||||| | || | || ||| | | Sbjct 576506 AACATCGTATTTGC-CACTGGCGGAGACGGCACTGGGAACTTCAGGGATTCGCTGAATTG 576448 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| | || ||| || ||||| || || || || | ||| || || || | | Sbjct 576447 TTGCCCATAAGTATTCATCAGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAA 576388 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | ||| | || || || || | ||| | |||| ||| || || || | Sbjct 576387 TTTTGCTATTCTCTAATATATATTCCACAAACTTCCTACTAACAACAAAATAGGCACTTC 576328 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || | |||| || | ||| ||| ||| ||||||| || ||||| || | Sbjct 576327 CAGAGAAAATGGGTGTGTTGAGAGGTGGGTGCTGTTTGTCTATCCCTGTGTTTTTTATCT 576268 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG---T 162595 | || || | || |||| ||| ||||||| || |||| || | || || | Sbjct 576267 TGCCATCAATTACTTCGTGATGTTTCTTCCACCTCACC-TCTT--TGTTTGAAGGCATTT 576211 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || |||| || || ||| | ||| |||| || ||| || ||| ||| Sbjct 576210 TTTCCGTTTCTAAGCTATTTTCACCGTTGAGGGCTTTCAACTTCTCCACTATTTCTTGAT 576151 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 ||||||| | || || || | ||||||||||| || | || ||||| | || | | Sbjct 576150 TGGTCTTGATTGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCA 576091 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | || ||||||| | ||||| || || || || || || ||||| || || |||| Sbjct 576090 TCCTATAGAGATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACA 576031 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || || ||||| |||| | |||||||| | ||||| || | ||||| | | Sbjct 576030 CTACACTTTCCAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCTTTTA 575971 Query 162836 C----GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGT-ATAGATT 162890 | | | || ||| | ||| | || | || || || | ||||| |||| || Sbjct 575970 CAGCTGCCAAGAAAGACTCTGGGGAC----TTTTTGTCAACATGAATGCAGTAATAG-TT 575916 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| | || ||| ||||| | |||||| | ||| | || ||||| | |||| Sbjct 575915 CTGAGGAACATATATGATTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCAC 575856 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || ||||| || ||||| || || || || || | || |||| Sbjct 575855 TATTGAATATGCAATGGGAAATTCTGCTTCTTCTTGGCTAAGAG 575812 >seq336 Length=1609600 Score = 123 bits (136), Expect = 3e-23 Identities = 179/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 |||||||| | ||||||||||| || ||||| | ||| || || ||||| ||||| Sbjct 219573 CAGATCCTTCATGCAGTTCAGATCAGCTTGGACCCTCGACCAAGAGGCATACACCACGCT 219514 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 |||| | ||| || | ||| ||||||||||| || || | || || ||||| Sbjct 219513 CTCCTGCTTAGAAGCCAGAAAAACATTGTCGAAGCAGGAGGCAATGGCCTGAACGGCTTT 219454 Query 162843 T--GAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900 | || || | ||| | ||| || || ||||| || ||||||| |||||||| || Sbjct 219453 TTGGAAAAGTTTGGG--AGATTTGCTGTCCACGTGGACACAGTATACGTTCTGAGGAGCA 219396 Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960 |||||| |||||||| || || |||||||| ||||| | || | ||| || ||||| Sbjct 219395 AAGATGGATCTCAGTAACCTTTCAAACATCTCAATCTTCTCATGGATCACCATGGAATAA 219336 Query 162961 GCTATGGGGAA 162971 || || ||||| Sbjct 219335 GCAATAGGGAA 219325 >seq3293 Length=147473 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 176970 TCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTT 177029 |||| |||||||||||||| || |||||| ||||| ||||| || ||||| | | Sbjct 145666 TCGTCCACGTGAATGAAAGACTCAGCCGGGATGTAATCCTCGTAGTTTTCTCTGGGAGGA 145725 Query 177030 CCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAG 177089 || || || | ||| || | || |||| ||| | ||| ||||| ||||||||||| Sbjct 145726 CCCAGAACCACGGGCACAGATCCGGCCAGAAGCGCCAAGTAAAGTTTCTCGGTAATATAA 145785 Query 177090 TCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAG 177139 || | | ||| || ||||| || ||||| || || || || || || Sbjct 145786 TCTTTAAAGATGGAATTTTCAAAGGCCAGATAAAACTTGCAAGAGGAAAG 145835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578053994688000