Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq9327 102 3e-18 seq1914 102 3e-18 seq1704 98.7 3e-17 seq39 98.7 3e-17 seq7 98.7 3e-17 seq8127 95.1 4e-16 seq2994 95.1 4e-16 >seq9327 Length=10195 Score = 102 bits (112), Expect = 3e-18 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 2538 AAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 2597 Query 2833 GCTT 2836 |||| Sbjct 2598 GCTT 2601 >seq1914 Length=120838 Score = 102 bits (112), Expect = 3e-18 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 69633 AAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 69574 Query 2833 GCTT 2836 |||| Sbjct 69573 GCTT 69570 Score = 98.7 bits (108), Expect = 3e-17 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 66190 AAGTAGCTCAGCTGAGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 66249 Query 2833 GCTT 2836 |||| Sbjct 66250 GCTT 66253 >seq1704 Length=317967 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 275175 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 275116 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 275115 CCGGGTTTCGGC 275104 >seq39 Length=347859 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 10498 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 10439 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10438 CCGGGTTTCGGC 10427 >seq7 Length=116306 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 82155 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 82096 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 82095 CCGGGTTTCGGC 82084 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 109063 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 109004 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 109003 CCGGGTTTCGGC 108992 >seq8127 Length=12493 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||| |||||||||||||||||| | | Sbjct 5199 GCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATC 5258 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5259 CCGGGTTTCGGC 5270 >seq2994 Length=158989 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||| |||||||||| | | Sbjct 66070 GCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGATCCCTGGTTCGATC 66129 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 66130 CCGGGTTTCGGC 66141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15840537000600