Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 197 2e-44 seq3069 188 1e-41 seq1876 165 1e-34 seq1259 159 5e-33 seq4230 140 5e-27 seq2344 95.1 2e-13 seq3825 87.8 3e-11 >seq7 Length=116306 Score = 197 bits (218), Expect = 2e-44 Identities = 183/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| ||||| |||| |||| ||| |||| ||| Sbjct 94700 TCTACAAGGTGCTCAAGCAGGTCCACCCGGACACCGG-----CATC-TCCTCCAAGGCCA 94647 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||||| | Sbjct 94646 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGCCGAGGCCTCCC 94587 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||| | Sbjct 94586 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTCC 94527 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || ||||||| ||||||||||||||||||||||| Sbjct 94526 GCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 94476 Score = 183 bits (202), Expect = 4e-40 Identities = 180/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| ||||| |||| |||| ||| |||| ||| Sbjct 82945 TCTACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCCTCCAAGGCCA 82998 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| |||||||| | Sbjct 82999 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCC 83058 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||| ||||||| ||||| | Sbjct 83059 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGGTCCAGACGGCCGTCC 83118 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || ||||||| ||||||||||||||||||||||| Sbjct 83119 GCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 83169 Score = 141 bits (156), Expect = 1e-27 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 ||||||||||| |||| ||||||| |||||||| |||||||| | || ||||||| Sbjct 93422 GTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCCGCCTGGCCCACTACAACAAG 93363 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| ||| ||| | | |||||||||||||| ||||| ||||| || ||| || || Sbjct 93362 CGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTCCGCCTCCTCCTGCCGGGAGAG 93303 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| ||||||||||||||||||||||| Sbjct 93302 CTGGCCAAGCACGCCGTCTCCGAGGGCACCA 93272 Score = 141 bits (156), Expect = 1e-27 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 ||||||||||| |||| ||||||| |||||||| |||||||| | || ||||||| Sbjct 111892 GTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCCGCCTGGCCCACTACAACAAG 111951 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| ||| ||| | | |||||||||||||| ||||| ||||| || ||| || || Sbjct 111952 CGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTCCGCCTCCTCCTGCCGGGAGAG 112011 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| ||||||||||||||||||||||| Sbjct 112012 CTGGCCAAGCACGCCGTCTCCGAGGGCACCA 112042 >seq3069 Length=342711 Score = 188 bits (208), Expect = 1e-41 Identities = 181/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 147226 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCTTCCAAGGCCA 147279 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| ||||||| | Sbjct 147280 TGAGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGCATCGCGGCCGAGGCGTCCC 147339 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||||| Sbjct 147340 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTGC 147399 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 147400 GCCTCCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 147450 Score = 188 bits (208), Expect = 1e-41 Identities = 181/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 154342 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 154395 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| |||| ||||||| ||||||| | Sbjct 154396 TGAGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCGGCCGAGGCGTCCC 154455 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||||| Sbjct 154456 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTGC 154515 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 154516 GCCTCCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 154566 >seq1876 Length=124320 Score = 165 bits (182), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 32048 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 31995 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| || |||||||| |||| ||||||| ||||| | Sbjct 31994 TGAGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGGGAGGCGTCCC 31935 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| || ||| | |||| ||||||||||| ||||||| Sbjct 31934 GCCTGGCCCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGC 31875 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || || ||||||| Sbjct 31874 GCCTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAAGGCACCA 31824 Score = 161 bits (178), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 43745 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 43798 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| || |||||||| |||| ||||||| ||||| | Sbjct 43799 TGAGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGGGAGGCGTCCC 43858 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| || ||| | |||| ||||||||||| ||||||| Sbjct 43859 GCCTGGCCCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGC 43918 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| ||| |||| | ||||||||| || || ||||||| Sbjct 43919 GCCTCCTGCTGCCCGGGGAATTGGCTAAGCACGCCGTGTCGGAAGGCACCA 43969 >seq1259 Length=427630 Score = 159 bits (176), Expect = 5e-33 Identities = 135/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 ||||||||||| || ||||||||||| |||| ||||||| |||||||| |||||| Sbjct 27955 ATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCCGCCTG 28014 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 || | || |||||||||| ||| ||| | | |||||||||||||| ||||| ||||| Sbjct 28015 GCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTCCGCCTC 28074 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || || ||||||| ||||||||||||||||||||||| Sbjct 28075 CTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 28120 >seq4230 Length=173914 Score = 140 bits (154), Expect = 5e-27 Identities = 178/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| ||||| |||| |||| Sbjct 53132 TACTCCATCTATGTCTACAAGGTGCTTAAGCAGGTCCACCCTGACACCGG-----CATC- 53079 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||| ||||| || ||||| || |||||||| || || |||| ||||| | Sbjct 53078 TCATCCAAGGCCATGAGCATTATGAATTCCTTTGTCAATGATATCTTCGAGCGCATAGCT 53019 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| ||| |||| | || |||||||||| ||| ||| | | || |||||| Sbjct 53018 GGAGAGGCCTCCCGCTTGGCCCACTACAACAAGCGCTCCACTATCACCTCCCGTGAGATC 52959 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || || ||||| | ||| || || ||||||| ||||||||||||||||||| Sbjct 52958 CAGACGGCTGTCCGCCTCCTTCTGCCAGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGC 52899 Query 725139 ACCA 725142 |||| Sbjct 52898 ACCA 52895 >seq2344 Length=125384 Score = 95.1 bits (104), Expect = 2e-13 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1813105 GCGGTTAAAGCCGTGCCGCGTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGT 1813164 |||||| | |||||||||||||| ||||| || ||||| || |||||||||| Sbjct 121901 GCGGTTGACGCCGTGCCGCGTGATGGCCATCAAGTGCCCGCGACAGGTCATGGTGTCGCA 121842 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 | ||| || |||||||| | |||||| |||| ||||||||||||||| ||| Sbjct 121841 GAGCAGGGCCAAGTGGCGATAGTTGACGTAGGAGCCGTCAAAGGAGATGACG 121790 >seq3825 Length=175568 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 |||||||| | |||||||| ||| |||||||||||||| |||||||| ||||| Sbjct 99053 TGCTTTCTCCTCTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGCAC 99112 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 ||||| |||||||||||| | || || || ||||| | |||| Sbjct 99113 TGCGCCCTCATCTCCAAGTCTGCGGGGGGAATCGGGGTGGCCG 99155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172768697909360