Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq39 136 4e-27 seq4617 123 2e-23 seq4804 116 3e-21 >seq39 Length=347859 Score = 136 bits (150), Expect = 4e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || |||||||| || || ||||| Sbjct 7484 CTCCTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAA 7543 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||||||| |||||| ||| | | | Sbjct 7544 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 7603 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||| | ||||| ||||| || |||||||| ||||| Sbjct 7604 CTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAAGTCTTCAC 7663 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 7664 AAAGATCTGCATT 7676 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || |||||||| || || ||||| Sbjct 6116 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAA 6175 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||||||| |||||| ||| | | | Sbjct 6176 GATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 6235 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| ||||| || ||||| || ||||| Sbjct 6236 CTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTCAC 6295 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 6296 AAAGATCTGCAT 6307 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || |||||||| || || ||||| Sbjct 5660 CTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAA 5719 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||||||| |||||| ||| | | Sbjct 5720 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 5779 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| ||||| || ||||| || ||||| Sbjct 5780 CTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTCAC 5839 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5840 AAAGATCTGCAT 5851 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || |||||||| || || ||||| Sbjct 5888 CTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAA 5947 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||| || || | ||||| || ||||||||| |||||| ||| | | Sbjct 5948 GATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 6007 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| ||||| || ||||| || || || Sbjct 6008 CTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTTAC 6067 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 6068 AAAGATCTGCAT 6079 >seq4617 Length=95303 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || || || Sbjct 85298 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 85239 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||| ||| |||||| ||| | | | Sbjct 85238 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATT 85179 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || ||||| Sbjct 85178 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCAC 85119 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 85118 AAAGATCTGCATT 85106 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || || || Sbjct 85754 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 85695 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||||||| |||||| ||| | | Sbjct 85694 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 85635 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| || || || ||||| || || || Sbjct 85634 CTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTGAC 85575 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 85574 AAAGATCTGCAT 85563 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || || || Sbjct 86894 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 86835 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| | |||||| || | ||||| || ||||||||| |||||| ||| | | Sbjct 86834 GATCAGTCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 86775 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||| ||||||| ||||| || || || |||||||| || || Sbjct 86774 TTCAATAGTGTCACTGGGTTCTACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTGAC 86715 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 86714 AAAGATCTGCAT 86703 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| |||| | ||| || | || ||||||||||| || || || Sbjct 85525 TCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAG 85466 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || ||||||||| |||||| ||| | | Sbjct 85465 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 85406 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||||||||||| ||||| || || || ||||| || || ||| Sbjct 85405 TCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTGACA 85346 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 85345 AAGATCTGCAT 85335 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || || || Sbjct 86666 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAA 86607 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||||||| |||||| ||| | | Sbjct 86606 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 86547 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| ||||||| ||||| || || || ||||| || || || Sbjct 86546 CTCAATGGTGTCACTGGGTTCTACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTGAC 86487 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 86486 AAAGATCTGCAT 86475 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || |||| ||| || || ||||| Sbjct 86210 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCAAA 86151 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||| ||| |||||| ||| | | Sbjct 86150 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 86091 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| || || || ||||| || || || Sbjct 86090 CTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTGAC 86031 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 86030 AAAGATCTGCAT 86019 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || || || Sbjct 86438 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAA 86379 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || ||||||||| |||||| ||| | | Sbjct 86378 GATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 86319 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || ||||| || || || Sbjct 86318 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTGAC 86259 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 86258 AAAGATCTGCAT 86247 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| |||| | ||| || | || ||||||||||| || || || Sbjct 85981 TCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAG 85922 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||| || || | ||||| || ||||||||| |||||| ||| | | Sbjct 85921 ATCAGCCTCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 85862 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || ||||| || || ||| Sbjct 85861 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTGACA 85802 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 85801 AAGATCTGCAT 85791 >seq4804 Length=43647 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || |||||||| || || ||||| Sbjct 5456 CTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAA 5397 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||| || || | ||||| || ||||||||| |||||| ||| | | Sbjct 5396 GATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 5337 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| ||||| || ||||| || ||||| Sbjct 5336 CTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTCAC 5277 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5276 AAAGATCTGCAT 5265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450499006382400