Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6273 138 2e-27 seq3926 138 2e-27 seq687 111 2e-19 >seq6273 Length=24169 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||| | || |||||||| || ||||| ||||| ||||| || || | Sbjct 17689 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 17630 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 17629 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 17570 Query 39759 CAAC 39762 | || Sbjct 17569 CTAC 17566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || |||||||||||||| || ||||||||||| || |||||||| | ||| || ||| | Sbjct 11448 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 11389 Query 40175 TATTGTATTGGAAAAATAACAAA 40197 ||||| || |||||||| ||||| Sbjct 11388 TATTGAATAGGAAAAATGACAAA 11366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| || || |||| |||| || ||||||| | | |||||| || ||||| Sbjct 19697 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 19638 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 |||| ||||| || || || || || || || |||||||||||||||| || ||||| | Sbjct 19637 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 19578 Query 39387 CCATGAAATCAAACGGATT 39405 |||| || ||||| ||||| Sbjct 19577 CCATAAAGTCAAATGGATT 19559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| || ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 15357 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 15298 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 15297 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 15252 >seq3926 Length=149525 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||| | || |||||||| || ||||| ||||| ||||| || || | Sbjct 65420 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCT 65361 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 65360 TTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 65301 Query 39759 CAAC 39762 | || Sbjct 65300 CTAC 65297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || |||||||||||||| || ||||||||||| || |||||||| | ||| || ||| | Sbjct 58657 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 58598 Query 40175 TATTGTATTGGAAAAATAACAAA 40197 ||||| || |||||||| ||||| Sbjct 58597 TATTGAATAGGAAAAATGACAAA 58575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| || || |||| |||| || ||||||| | | |||||| || ||||| Sbjct 67406 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 67347 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 |||| ||||| || || || || || || || |||||||||||||||| || ||||| | Sbjct 67346 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 67287 Query 39387 CCATGAAATCAAACGGATT 39405 |||| || ||||| ||||| Sbjct 67286 CCATAAAGTCAAATGGATT 67268 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| || ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 62997 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 62938 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 62937 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 62892 >seq687 Length=330907 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || || || || || || ||||||| || | ||| ||| Sbjct 133840 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 133899 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||||||||| ||||||| ||||| |||||||| ||||| || || || || ||| Sbjct 133900 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACGCA 133959 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 133960 ACCACTCTTTCACC 133973 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 39273 AAAAGTCAACATCTAAAGAAAAA---TGATTATCTTCTTGTGACATAACTCCCATTTTTT 39329 |||||||| ||||||||| ||| | ||||| | |||| ||||||||| | | | || Sbjct 128780 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTGGGACATAACTGCAAAATGTT 128839 Query 39330 GGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCA 39389 | ||||| ||| | |||| || ||||| ||||| ||||||| || || ||||||| Sbjct 128840 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 128899 Query 39390 TGAAATCAAACGGATT 39405 |||| ||||| || || Sbjct 128900 TGAAGTCAAAAGGGTT 128915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686459905099200