Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6273 107 2e-18 seq3926 107 2e-18 seq687 100 2e-16 seq446 100 2e-16 seq694 93.3 3e-14 >seq6273 Length=24169 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || ||||| || |||||||| || || ||||| Sbjct 17554 GGTGAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 17613 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||||||| |||||||||||||| ||||||| || | || ||||| |||||| | Sbjct 17614 TCCATATTTTGGCTAAAGAAACGAGGTCTGATGCCCGGACTTACTTTTTCTAATGAGCTG 17673 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 17674 ATTAGTAGAGATGA 17687 Score = 105 bits (116), Expect = 5e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| ||||| Sbjct 11366 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCG 11425 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 ||||| |||||||| ||||| || Sbjct 11426 TCATTCTGGACAGCTGAAGAGGT 11448 Score = 100 bits (110), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 9/141 (6%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| ||||| || ||||||||||||| ||||| |||||||| Sbjct 19559 AATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACTAACTTCTTTGAAAAG 19618 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGT------GACAATAAATTT 44608 || || ||||||||||| | ||||| | |||| ||||| || ||| ||| Sbjct 19619 CGTGTAGGAGAATATCAAAGGATGGGTG---TGATGTCAAGTCCTGCAGATAATTCATTC 19675 Query 44609 ACTACGGATGAAGATTTCTAA 44629 ||| ||||| |||||||||| Sbjct 19676 ACTTTGGATGCAGATTTCTAA 19696 >seq3926 Length=149525 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || ||||| || |||||||| || || ||||| Sbjct 65285 GGTGAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 65344 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||||||| |||||||||||||| ||||||| || | || ||||| |||||| | Sbjct 65345 TCCATATTTTGGCTAAAGAAACGAGGTCTGATGCCCGGACTTACTTTTTCTAATGAGCTG 65404 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 65405 ATTAGTAGAGATGA 65418 Score = 105 bits (116), Expect = 5e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| ||||| Sbjct 58575 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCG 58634 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 ||||| |||||||| ||||| || Sbjct 58635 TCATTCTGGACAGCTGAAGAGGT 58657 Score = 100 bits (110), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 9/141 (6%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| ||||| || ||||||||||||| ||||| |||||||| Sbjct 67268 AATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACTAACTTCTTTGAAAAG 67327 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGT------GACAATAAATTT 44608 || || ||||||||||| | ||||| | |||| ||||| || ||| ||| Sbjct 67328 CGTGTAGGAGAATATCAAAGGATGGGTG---TGATGTCAAGTCCTGCAGATAATTCATTC 67384 Query 44609 ACTACGGATGAAGATTTCTAA 44629 ||| ||||| |||||||||| Sbjct 67385 ACTTTGGATGCAGATTTCTAA 67405 >seq687 Length=330907 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | |||||||| || ||||| ||||| ||||| || | ||||||||| Sbjct 136022 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 135963 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||| || ||||||||| | | ||||| || |||||||||||| Sbjct 135962 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACATCAAAGAT 135915 >seq446 Length=844205 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| |||| || || ||| | || ||||||||| ||| ||||| ||||| || Sbjct 571362 ATGGCTCTGCCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAATGGCGAACTCTCT 571303 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| | ||||| | || || ||||||||||| || || || || |||||||| ||| Sbjct 571302 TGTCAGCTATATCAGCGTTCTGGAGACATGGGACTGGGTGTACCATTCAACATAGCTAGT 571243 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || | |||||||| || ||||| Sbjct 571242 TATTCACTTCTTACTTCAATGATTGCCCATGTTAC 571208 >seq694 Length=643538 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 |||| ||||| ||||||||| | ||| | |||||||| || |||||||| ||| Sbjct 641763 TCCAACCGTTAATCTTCCAGTTTGGGATCCAGCTTGTCACACCGTTAATGGTGAATTTGC 641704 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGT-TCTCCTGAGCTTGTTGCAGTGCTTTG 77512 |||| || |||| |||| || |||| || | |||| | ||||||| | ||| ||| Sbjct 641703 TGTCAGTATAGATTGCCAGTTTTCTGATATTCTGTCTCTTT-GCTTGTTCTATTGCCTTG 641645 Query 77513 GATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACA 77572 | || || || |||||||| | || ||||| || | || ||||| || | | Sbjct 641644 CAAGCTGCGTGTATTTCAGCCCTTTGATTTGTTTGCCGTCCATGAAGTCTTTCACTATTA 641585 Query 77573 TTAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCT 77620 || || ||||||| | ||||||||||| || | ||||| || ||| Sbjct 641584 TTTAGAGGGTGATCAGGTCCCCAATATACACCTGTTCCAGCACGTGCT 641537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397202755941400