Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq39 91.5 1e-13 >seq39 Length=347859 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || || || || || ||||||||| | |||| | Sbjct 7005 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCA 7064 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| ||||| | || || | ||||||||| || || | || || || Sbjct 7065 TCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCTTCCTTG 7124 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | ||||| ||| ||| || ||||| || || Sbjct 7125 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCTAGGGTGATG 7184 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| || ||||||||||| ||||| Sbjct 7185 GTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 7219 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || || || ||||||||| | |||| | Sbjct 5409 CGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCA 5468 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| || || | || || | ||| || || || || | || || || Sbjct 5469 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTG 5528 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | ||||| ||| ||| || || |||||||| Sbjct 5529 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCAAGAGTTATG 5588 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | |||||| |||| || ||||||||||| ||||| Sbjct 5589 GTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424663647735360