Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq446 86.0 5e-12 >seq446 Length=844205 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 111771 CTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAA 111830 || ||| || || | || |||||||| | || || || |||||||| ||||| || Sbjct 571198 CTTCAAGCCTGTAACATGGGCAATCATTGAAGTAAGAAGTGAATAACTAGCTATGTTGAA 571257 Query 111831 TGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTG 111890 ||| ||||| || ||||| ||||| || | |||||||||||||| || |||| | Sbjct 571258 TGGTACACCCAGTCCCATGTCTCCAGAACGCTGATATAGCTGACAAGAGAGTTCGCCATT 571317 Query 111891 TGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 | | | ||||| || || || |||| || ||||||| ||||| Sbjct 571318 TAAAATGTAAAACTGGCAGAGAGCATGGCATGGAGGCAGAGCCAT 571362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391695866961640