Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3825 87.8 2e-12 >seq3825 Length=175568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||| ||||| | ||||||||||| | ||||| | ||| ||||| |||||||||||| Sbjct 99147 CCGATTCCCCCCGCAGACTTGGAGATGAGGGCGCAGTGCTTCAGCGTGTCGTAGATGCCC 99088 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGA 79754 ||||| |||||||||||| || || |||||||| || Sbjct 99087 TCGATGCTGTCGTCCTTCATGCAGAGGAGAAAGCAGCTGGA 99047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 19271 ATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCC 19330 |||||||| |||||||| |||||||||||||| ||||| ||| | ||||| | ||||||| Sbjct 99068 ATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGCACTGCGCCCTCATCTCC 99127 Query 19331 AAGTGGTCCGGGGGTATCGGG 19351 |||| | ||||| |||||| Sbjct 99128 AAGTCTGCGGGGGGAATCGGG 99148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548166339043200