Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq312 91.5 2e-13 seq3952 86.0 7e-12 seq687 86.0 7e-12 seq353 86.0 7e-12 >seq312 Length=6374073 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||| |||| | ||| || ||||| || ||||| ||||| ||||||||||| Sbjct 4255104 GTAAAGATATATCTAGGGCTTGCAGCATCTTTTCCACCATGCAGCCTAGTTCCAAACTGA 4255163 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||| ||||||||| |||||| ||||| ||||||||||| | | Sbjct 4255164 CCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 4255223 Query 152149 ATCGT 152153 || || Sbjct 4255224 ATAGT 4255228 >seq3952 Length=275151 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||||||||||||| ||| | ||||| || || Sbjct 127332 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTTGTACCAAACTGA 127391 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||| || | | | || || || |||||||| ||||||||||||||| Sbjct 127392 CCAACAGGCTGCAGCAAACTGACATTATTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 127451 Query 117425 ATCGT 117429 || || Sbjct 127452 ATAGT 127456 >seq687 Length=330907 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| || || | |||||| ||||| | || | ||||| Sbjct 133838 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 133897 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACA 74879 | | |||||| ||||| || | |||| ||||||||| ||||||||| Sbjct 133898 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACA 133947 >seq353 Length=2866884 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||||||||||||| ||| | ||||| || || Sbjct 1102754 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAACTGA 1102813 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | || || || |||||||| ||||||||||||||| Sbjct 1102814 CCAATAGGCTGTAGCAAGCTGGCATTATTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 1102873 Query 117425 ATCGT 117429 || || Sbjct 1102874 ATTGT 1102878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546858394344000