Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq446 89.7 4e-13 seq7713 84.2 2e-11 seq955 84.2 2e-11 >seq446 Length=844205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || ||||||| ||||| ||||| ||||||||||| || || | || || | || Sbjct 572721 TCATATCTTTGTACTCGGCTCCAAAATGTCTCCACTGGAAGCCATAAATAGGACCTAAGT 572780 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || || || || ||| ||||| || || | | ||||| ||||| | Sbjct 572781 CTCCTTCCTCTCTAGAGAAAAATCCCTGTTTGTCTAAGAATTGCCGAGAACCATTGGCAT 572840 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || ||||| |||| |||||||| | ||||| || || Sbjct 572841 CCCAAATCTTAACTCCCTTAGCAGAAAGCTCTTTTGCATTTGTAGAACC 572889 >seq7713 Length=13408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 110413 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 110472 || || ||||| || || |||| | | | ||| | ||| || || ||||||||| ||||| Sbjct 10613 CTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATTTTTCTCAGGGATGGAGTACCAA 10672 Query 110473 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||||||||| ||||| || ||||| ||| Sbjct 10673 GTCTTCCTACCCATTATGACCACATTTTGCTTTCCT 10708 >seq955 Length=741658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 110413 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 110472 || || ||||| || || |||| | | | ||| | ||| || || ||||||||| ||||| Sbjct 737545 CTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATTTTTCTCAGGGATGGAGTACCAA 737604 Query 110473 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||||||||| ||||| || ||||| ||| Sbjct 737605 GTCTTCCTACCCATTATGACCACATTTTGCTTTCCT 737640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406051514249760