Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq446 98.7 9e-16 >seq446 Length=844205 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || ||||| | || || || | |||||||| |||||||| || || || | Sbjct 571211 ACATGGGCAATCATTGAAGTAAGAAGTGAATAACTAGCTATGTTGAATGGTACACCCAGT 571270 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||||| || || ||||| ||||| || || || || ||||| | ||| || Sbjct 571271 CCCATGTCTCCAGAACGCTGATATAGCTGACAAGAGAGTTCGCCATTTAAAATGTAAAAC 571330 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| | ||||| || || || ||||| || |||||| Sbjct 571331 TGGCAGAGAGCATGGCATGGAGGCAGAGCCATTGCAGAGAGATC 571374 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||| || ||||| || || || ||||| | |||||||| || ||| | ||| Sbjct 571374 GATCTCTCTGCAATGGCTCTGCCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAAT 571315 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || || || || ||||| ||||| || || ||||||||||| | || || || ||| Sbjct 571314 GGCGAACTCTCTTGTCAGCTATATCAGCGTTCTGGAGACATGGGACTGGGTGTACCATTC 571255 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||||| |||||||| | || || || | ||||| || ||||| Sbjct 571254 AACATAGCTAGTTATTCACTTCTTACTTCAATGATTGCCCATGT 571211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447969460521600