Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq39 100 2e-16 seq4804 95.1 1e-14 >seq39 Length=347859 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | || | ||| || ||| ||| || || || || || |||| Sbjct 6309 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 6368 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || ||||||||||| ||||| || || | ||||||||||| || Sbjct 6369 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 6428 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || || || | |||||| Sbjct 6429 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 6488 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| |||| || |||| || || |||||||| |||||| Sbjct 6489 TCCAAGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCATC 6536 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||| || || ||| ||| || || || || || |||| Sbjct 5625 CCACCTCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 5684 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || ||||||||||| ||||| || || | ||||||||||| || Sbjct 5685 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 5744 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || || || | ||||| Sbjct 5745 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACC 5804 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| |||| || |||| || || |||||||| |||||| Sbjct 5805 TCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATC 5852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || ||||| | || || || | || || ||||| Sbjct 7472 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCCAGCTG 7531 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| ||||| || || | ||||||||||| || | || || |||||| ||| || Sbjct 7532 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 7591 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| || | | || ||||| | |||||| || | ||||| |||| || || Sbjct 7592 GGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 7651 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || |||||||| ||||| || Sbjct 7652 CAAAGTCTTCACAAAGATCTGCATTTT 7678 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || |||| || || || | || || ||||| Sbjct 7244 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 7303 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| ||||| || || | ||||||||||| || | || || |||||| ||| || Sbjct 7304 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 7363 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| || | | || || || | |||||| |||| ||||| |||| || || Sbjct 7364 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTCCCGGT 7423 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||| ||||| Sbjct 7424 CAAGGTCTTTACAAAGATCTGCAT 7447 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||| || || ||| ||| || || || || || |||| Sbjct 5853 CCACCTCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 5912 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || ||||||||||| ||||| || || | ||| || |||| || Sbjct 5913 AGTGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGA 5972 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || || || | ||||| Sbjct 5973 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACC 6032 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| |||| || |||| || || |||||||| |||||| Sbjct 6033 TCCAGGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCATC 6080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| || || || || || |||| ||||| || | || || Sbjct 5415 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCC 5474 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | ||||||||||| || | || || |||||| | Sbjct 5475 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 5534 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || | ||||| || | || || |||| Sbjct 5535 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACCTCAAGAGTTATGGTTTTG 5594 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || |||| || || |||||||| |||||| Sbjct 5595 CCAGTCAAGGTCTTCACAAAGATCTGCATC 5624 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| || || || || || |||| || || || | || || Sbjct 6099 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCATCTTCC 6158 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | ||||||||| | || | || || |||||| | Sbjct 6159 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 6218 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || | ||||| |||| ||||| |||| Sbjct 6219 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTC 6278 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || |||| || || |||||||| |||||| Sbjct 6279 CCGGTCAAGGTCTTCACAAAGATCTGCATC 6308 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || || | ||||| || | || || ||||| Sbjct 6788 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCTTCCAGCTG 6847 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| ||||| || || | ||||||||||| || | || || |||||| ||| || Sbjct 6848 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 6907 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| || | | || || || | ||||| || | || || |||| || || Sbjct 6908 GGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACCTCAAGAGTTATGGTTTTGCCAGT 6967 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 || || || |||||||| |||||| Sbjct 6968 CAAGGTCTTCACAAAGATCTGCATC 6992 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | || | ||| || ||| ||| || || || || || |||| Sbjct 6993 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 7052 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || ||||||||||| ||||| || || | ||| || |||| || Sbjct 7053 AGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGTTGATCGGGAGGA 7112 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || || || | ||||| Sbjct 7113 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCCACC 7172 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || | ||||| |||| || |||| || || |||||||| |||||| Sbjct 7173 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATC 7220 >seq4804 Length=43647 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | || | ||| || ||| ||| || || || || || |||| Sbjct 2127 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2068 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| ||||| || || | ||||||||||| || Sbjct 2067 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 2008 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || ||||| | |||||| Sbjct 2007 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 1948 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | ||||| |||| || |||| || || |||||||| ||||| || Sbjct 1947 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTTACAAAGATCTGCATTTT 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429271909651640