Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4804 98.7 7e-16 seq39 98.7 7e-16 seq4617 86.0 4e-12 >seq4804 Length=43647 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || || ||||| ||||| || || || || || Sbjct 1898 AAAATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 1957 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| ||||| | || || || Sbjct 1958 AGCGACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGA 2016 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || |||||||||||||| |||||||| | ||||| | ||| || Sbjct 2017 CCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTA 2076 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 2077 CAACATCCAGAAGGAGTCCAC 2097 >seq39 Length=347859 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| ||||| || || || || ||| Sbjct 7219 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAACCCAGT 7160 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || || |||||| Sbjct 7159 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAA 7100 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||||||||| |||||||| | ||||| | ||| |||||| Sbjct 7099 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 7040 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 7039 ATCCAGAAGGAGTCCAC 7023 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| ||||| || || || || ||| Sbjct 6763 ATGCAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 6704 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| ||||| | || || || || Sbjct 6703 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 6644 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||||||||| |||||||| | ||||| | ||| |||||| Sbjct 6643 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 6584 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 6583 ATCCAGAAGGAGTCCAC 6567 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || || | || || ||||| ||||| || || || || || Sbjct 7678 AAAATGCAGATCTTTGTGAAGACTTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 7619 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| ||||| | || || || Sbjct 7618 AGCGACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGA 7560 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| |||||||| |||||||| | |||||| | ||||| Sbjct 7559 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGATTA 7500 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 7499 CAACATCCAGAAGGAGTCCAC 7479 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| ||||| || || || || ||| Sbjct 6307 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGT 6248 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || || || || Sbjct 6247 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCTGACCA 6189 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| |||||||| | ||||| | ||| ||||| Sbjct 6188 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACGCTCTCCGACTACAA 6129 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 6128 CATCCAGAAGGAGTCCAC 6111 >seq4617 Length=95303 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || || || || ||||| || || || || || Sbjct 85104 AAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 85163 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || || || || ||||| | || || || Sbjct 85164 AGTGACACCATTGAGAATGTCAAGGC-TAAGATCCAGGATAAGGAAGGCATTCCTCCTGA 85222 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || || |||||||| || |||||||| | ||||| | ||| || Sbjct 85223 TCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 85282 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 85283 CAACATCCAGAAGGAGTCCAC 85303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337794232958240