Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6273 118 9e-22 seq3926 118 9e-22 seq687 107 2e-18 >seq6273 Length=24169 Score = 118 bits (130), Expect = 9e-22 Identities = 109/137 (80%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 |||| || |||| | ||||| |||||||| || |||||||| || | ||||||||| | Sbjct 17699 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAG 17641 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||||| || || ||||||||||| | ||||| || ||||||||||| || ||||| || Sbjct 17640 ACCTCGTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 17581 Query 4679 GGCGGCAAACGCTACTA 4695 || ||||| ||||||| Sbjct 17580 TGCAGCAAATGCTACTA 17564 >seq3926 Length=149525 Score = 118 bits (130), Expect = 9e-22 Identities = 109/137 (80%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 |||| || |||| | ||||| |||||||| || |||||||| || | ||||||||| | Sbjct 65430 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAG 65372 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||||| || || ||||||||||| | ||||| || ||||||||||| || ||||| || Sbjct 65371 ACCTCGTTTCTTTAGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 65312 Query 4679 GGCGGCAAACGCTACTA 4695 || ||||| ||||||| Sbjct 65311 TGCAGCAAATGCTACTA 65295 >seq687 Length=330907 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||| || || || || | || |||||||| |||||||| | Sbjct 133838 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 133897 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| || ||||| | ||||| ||||| || ||||| || || || |||| Sbjct 133898 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACG 133957 Query 4690 CTAC 4693 | || Sbjct 133958 CAAC 133961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426777500009240