Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6273 116 5e-21 seq3926 116 5e-21 seq687 87.8 2e-12 >seq6273 Length=24169 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||||||||| | || |||||||| || || |||||||| || || ||||| || Sbjct 17687 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 17628 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| | || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 17627 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGC 17569 Score = 105 bits (116), Expect = 9e-18 Identities = 107/139 (77%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 47850 |||| || || |||| |||| || ||||||| | || ||||| || ||||| Sbjct 19697 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 19638 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 |||||||||| || ||||| || || || || |||||||||||||||| || ||||| | Sbjct 19637 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 19578 Query 47911 CCATAAAATCAAATGGATT 47929 ||||||| ||||||||||| Sbjct 19577 CCATAAAGTCAAATGGATT 19559 >seq3926 Length=149525 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||||||||| | || |||||||| || || |||||||| || || ||||| || Sbjct 65418 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 65359 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| | || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 65358 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGC 65300 Score = 105 bits (116), Expect = 9e-18 Identities = 107/139 (77%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 47850 |||| || || |||| |||| || ||||||| | || ||||| || ||||| Sbjct 67406 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 67347 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 |||||||||| || ||||| || || || || |||||||||||||||| || ||||| | Sbjct 67346 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 67287 Query 47911 CCATAAAATCAAATGGATT 47929 ||||||| ||||||||||| Sbjct 67286 CCATAAAGTCAAATGGATT 67268 >seq687 Length=330907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||||| | ||| || || || || || || ||||||| || | || | Sbjct 133838 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 133897 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 ||||||||||||| || || |||| ||||| ||||| || ||||| || || || || | Sbjct 133898 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACG 133957 Query 48283 C 48283 | Sbjct 133958 C 133958 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| ||||||| || || |||| || | || ||||| |||||||||||| | Sbjct 137808 ACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 137867 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCC 48752 |||||||||||||| || ||||||| || ||||| || | || ||||||| Sbjct 137868 TATTGGATTGGGAAGATGACAAATCGATGGGGATTCTTCCTTAAGAGAGGTTCC 137921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694214833939200