Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq4617 89.7 4e-13 seq39 84.2 2e-11 >seq4617 Length=95303 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || ||||| || || ||||| ||| |||| ||||||||| Sbjct 85335 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAGT 85394 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||| |||||| |||| ||||| Sbjct 85395 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 85454 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | || ||||| || |||||||| || | |||| || || Sbjct 85455 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 85514 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || || ||| | || | |||||| | ||||| Sbjct 85515 ATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 85561 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || ||||| || || ||||| ||| |||| ||| ||||| Sbjct 85791 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 85850 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||| |||||| |||| |||||| Sbjct 85851 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 85910 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | || ||||| || |||||||| || | |||| || || Sbjct 85911 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 85970 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || || ||| | || | |||||| | ||||| Sbjct 85971 ATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 86017 >seq39 Length=347859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||| ||||||||||| || | || ||||||||| Sbjct 5623 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAAACCATAACTCTTGAGGTGGAACCCAGT 5564 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||| |||||| |||| ||| || Sbjct 5563 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 5504 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || ||||| || | ||| |||||||| |||||||| | | ||| | |||| || | Sbjct 5503 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCT--CCGACTACA 5446 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || || || || || || || || | || |||||||| | ||||| Sbjct 5445 ACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGTGG 5397 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||| ||||||||||| || | || ||||||||| Sbjct 6991 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAAACCATAACTCTTGAGGTGGAACCCAGT 6932 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||| |||||| |||| ||| || Sbjct 6931 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 6872 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || ||||| || | ||| |||||||| |||||||| | | ||| | | || || | Sbjct 6871 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCT--CAGACTACA 6814 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 | || || || || || || || ||| | || |||||||| | || |||| Sbjct 6813 ACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGCA 6763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421542437721280