Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq6273 107 2e-18 seq3926 107 2e-18 seq687 86.0 7e-12 >seq6273 Length=24169 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| |||||||||| ||||||||||| || | ||| ||||| | |||||||| || Sbjct 17687 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 17628 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||| | ||||| || || |||||||| || || ||||| || ||||| || Sbjct 17627 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 17568 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 17567 ACTACACGT 17559 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 23158 TTTTAAAAATCTTCATCTAAAGTGAAT---TTCACTGCTTTATCACTATTCATAACACCC 23214 ||||| |||||| |||| ||||||||| || |||| | ||| ||| |||||| Sbjct 19698 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC---AGGACTTGACATCACACCC 19642 Query 23215 ATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATA 23274 || |||||||||| || ||||| |||| || || || || || || || | || ||| Sbjct 19641 ATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATA 19582 Query 23275 TTTTCCATAAAATCAAATGGATT 23297 || |||||||| ||||||||||| Sbjct 19581 TTCTCCATAAAGTCAAATGGATT 19559 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | || || |||||||| ||||||||||||||||| |||||||| || Sbjct 15366 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 15307 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 15306 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 15268 >seq3926 Length=149525 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| |||||||||| ||||||||||| || | ||| ||||| | |||||||| || Sbjct 65418 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATCAGACCTCGTTTCTTT 65359 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||| | ||||| || || |||||||| || || ||||| || ||||| || Sbjct 65358 AGCCAAAATATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 65299 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 65298 ACTACACGT 65290 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 23158 TTTTAAAAATCTTCATCTAAAGTGAAT---TTCACTGCTTTATCACTATTCATAACACCC 23214 ||||| |||||| |||| ||||||||| || |||| | ||| ||| |||||| Sbjct 67407 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC---AGGACTTGACATCACACCC 67351 Query 23215 ATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATA 23274 || |||||||||| || ||||| |||| || || || || || || || | || ||| Sbjct 67350 ATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATA 67291 Query 23275 TTTTCCATAAAATCAAATGGATT 23297 || |||||||| ||||||||||| Sbjct 67290 TTCTCCATAAAGTCAAATGGATT 67268 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | || || |||||||| ||||||||||||||||| |||||||| || Sbjct 63006 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 62947 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 62946 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 62908 >seq687 Length=330907 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || ||||| | |||||| || || || | ||||||||||| |||| || | Sbjct 133838 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 133897 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||||||||| || ||||| | || || ||||| || || || ||||| || || | Sbjct 133898 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCGAACG 133957 Query 23651 CCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 | || | | | ||| |||| || | |||||||| Sbjct 133958 CAACCACTCTTTCACC---TGTTTCAATGAAATCAGAA 133992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521147207592000