Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq440 136 6e-27 seq1582 132 7e-26 >seq440 Length=994695 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| || || | || ||| ||||||||| |||||| || ||||| ||||| ||| Sbjct 582200 GTCTGAAATAGGCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGAACGTCGCAGACC 582259 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | || ||||||| |||||| | ||||| |||||||| ||||| || |||| |||||| Sbjct 582260 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 582319 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || |||| | || || || || | | ||| ||||||||||| | Sbjct 582320 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCT 582379 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||| ||||| || | || ||||||||||| || ||||||||||| Sbjct 582380 GCCTGAGTTTCTTTCACAGTAGGCGGATACATTTCTCCATCAATCATCTG 582429 Score = 118 bits (130), Expect = 2e-21 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| | || |||||| || || || || || ||||||||||| | || ||| Sbjct 579273 TTCACGATGTCAAAGCCCACGCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAG 579332 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||||| || |||| || ||||| | |||||| |||||||| | || | ||| || Sbjct 579333 CAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTC 579392 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCAC 8529 ||||| |||||||| || || ||||||| || |||||| | | ||| | |||| Sbjct 579393 TCACCAAAGATGGCTCCAGGGCGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCAT 579451 Query 8530 AGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || | ||||| || || | ||||| ||||| || || ||||| ||||| Sbjct 579452 AGCATCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 579508 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || || ||||| |||||| | || ||| | ||| ||| | || Sbjct 583556 CTTACCCCATGCCCAAGACCTTTTGTGAAGCCTGGTCCTTTCTGAGTATCTGTCTTGAAG 583615 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 583616 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 583675 Query 9770 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 9799 ||| |||| | |||| || |||| ||||| Sbjct 583676 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 583706 >seq1582 Length=198694 Score = 132 bits (146), Expect = 7e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 |||| | || ||||| | ||| || || | || || || ||||||||||||||||| Sbjct 106169 TTGCCGTGTTCACGATTCGGAAGCCGGCGGCACCACCAAAAGTGCTGGGCTTCCAGTATT 106110 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | |||||||||||| |||| ||| ||| || || | ||||| |||||||||| ||| | Sbjct 106109 CAGGGGAGCAGATGGGGTTCCCCAGGAGCCCCTTCAAAGAGAAGGGAGCCCCCATCTCTA 106050 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||||||| || |||||| |||||| || ||| |||||||| | |||| | | | Sbjct 106049 TCATGCTCTGTCCAAAGATGCCGTTGGAGTAGGTCTTCTCCACCAACAGGCCGGGGAAGA 105990 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAG 8550 ||||| ||| || | |||||| || || Sbjct 105989 ACTCCAGAGCATCAATGTCTCCATACAG 105962 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9085 TGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTA 9144 |||||||| |||| | ||| ||||| | || || || |||||||||||| | Sbjct 102029 TGCCAGTGGTACAGCTGGTTGAACTCCAGAGCGATGCGGTTCTGGTACTGGAACTGGGCC 101970 Query 9145 CCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCGCTGAGCTGCTGAACG 9204 |||||||| || || |||| ||||| ||||| || |||||||||||||| ||||| ||| Sbjct 101969 CCAAAGAGAAGCTCAGGCTCAAACATCAGCTTCAAGTGGTAGCCGCTGAGATGCTGGACG 101910 Query 9205 TATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 || | | | || ||| ||||| || || || Sbjct 101909 TAATCCTCAATGACAATTTTGATCGTCTCACC 101878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716408321011200