Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4617 156 1e-32 seq39 147 5e-30 seq4804 132 1e-25 >seq4617 Length=95303 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||||| ||||||||| | ||| Sbjct 85338 CAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAGTGAC 85397 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 85398 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 85457 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||||||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 85458 AGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATC 85517 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || |||||||| Sbjct 85518 CAAAAAGAATCCACCCTCCATCTTGT 85543 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | || || || || |||||||| |||||||| || ||| Sbjct 85794 CAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 85851 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || ||||| || || | Sbjct 85852 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAAC 85911 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 85912 AGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 85971 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || || |||||||| Sbjct 85972 TCCAAAAAGAATCCACCCTCCATCTTGT 85999 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||||| ||||||||| | ||| Sbjct 85566 CAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAGTGAC 85625 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 85626 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 85685 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||||||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 85686 AGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATC 85745 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 85746 CAGAAGGAGTCCACCCTCCATCTTGT 85771 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || |||||||| ||||| ||| | ||| Sbjct 86706 CAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCCTGGAGGTAGAACCCAGTGAC 86765 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 86766 ACTATTGAAAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 86825 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||||||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 86826 AGACTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATC 86885 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 86886 CAGAAGGAGTCCACCCTCCATCTTGT 86911 Score = 136 bits (150), Expect = 1e-26 Identities = 162/217 (75%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || || || |||||||| |||||||| Sbjct 85104 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGA- 85159 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||| ||||| ||||| ||||| || ||||| || |||| Sbjct 85160 -GCCCAGTGACACCATTGAGAATGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCTC 85218 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||||||||| || ||||| |||||||| | || || ||| Sbjct 85219 CTGATCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCG 85278 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || || || || || |||||||| Sbjct 85279 ACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGT 85315 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||||| ||||||||| | ||| Sbjct 86022 CAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAACCCAGTGAC 86081 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct 86082 ACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAG 86141 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| |||||| | |||||||| | || || |||| || ||| || Sbjct 86142 AGGCTGATCTTTGCCGGCAAACAGTTGGAAGATGGCCGCACCCTCTCCGACTACAACATC 86201 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 86202 CAGAAGGAGTCCACCCTCCATCTTGT 86227 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||||| ||||| ||| | ||| Sbjct 86478 CAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTAGAACCCAGTGAC 86537 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 86538 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 86597 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| || || ||||| |||||||| | || || |||| || ||| || Sbjct 86598 AGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATC 86657 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 86658 CAGAAGGAGTCCACCCTCCATCTTGT 86683 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | || || || || |||||||| |||||||| || ||| Sbjct 86250 CAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 86307 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || ||||| || |||| Sbjct 86308 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGC 86367 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 86368 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 86427 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 86428 TCCAGAAGGAGTCCACCCTCCATCTTGT 86455 >seq39 Length=347859 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || ||||| |||||||| ||||||||| | ||| Sbjct 7216 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAACCCAGTGAC 7157 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| || || || Sbjct 7156 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAACAG 7097 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| |||||||| |||||||| | || || |||| || ||| || Sbjct 7096 AGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACATC 7037 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || |||||||| || | || ||| Sbjct 7036 CAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGA 6998 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || ||||| |||||||| ||||||||| | ||| Sbjct 5848 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGTGAC 5789 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||||| Sbjct 5788 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAG 5729 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | || || |||| || ||| || Sbjct 5728 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACATC 5669 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || || || || | || ||| Sbjct 5668 CAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGA 5630 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | || || ||||| |||||| | |||||||| || ||| Sbjct 6532 CAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCTTGGAGGTGGA--GCCCAGTG 6475 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || ||||| ||||||| Sbjct 6474 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGC 6415 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || |||| || ||| Sbjct 6414 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACA 6355 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || |||||||| || | || ||| Sbjct 6354 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGA 6314 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || ||||| || || || ||||||||| | ||| Sbjct 5620 CAGATCTTTGTGAAGACCTTGACTGGCAAAACCATAACTCTTGAGGTGGAACCCAGTGAC 5561 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||||| Sbjct 5560 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAG 5501 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | || || |||| || ||| || Sbjct 5500 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACATC 5441 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 5440 CAGAAGGAGTCCACTCTCCACCTGGT 5415 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || ||||| |||||||| ||||||||| | ||| Sbjct 6076 CAGATCTTTGTAAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGTGAC 6017 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| || || || Sbjct 6016 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAACAG 5957 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | || || |||| || ||| || Sbjct 5956 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAACATC 5897 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || || || || | || ||| Sbjct 5896 CAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGA 5858 >seq4804 Length=43647 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || ||||| |||||||| ||||||||| | ||| Sbjct 5268 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTGGAGGTGGAACCCAGTGAC 5327 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| || || || Sbjct 5328 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAACAG 5387 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | ||||| | || || ||| || Sbjct 5388 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAACATC 5447 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 5448 CAGAAGGAGTCCACTCTCCACCTGGT 5473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202924895702320