Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2308 125 7e-24 seq8067 102 8e-17 >seq2308 Length=189564 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| ||||| || |||||||| |||||||| || Sbjct 135514 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGGCCAGGCATTAGCCCTCGTTTCTTC 135573 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||||||||| | ||||| || ||||||||||| || ||||||||||| |||||||| Sbjct 135574 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 135633 Query 16379 ACCAATCGCTCACC 16392 || | ||| ||||| Sbjct 135634 ACTACTCGTTCACC 135647 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||||| |||| ||||||||||| || |||||||||||||||||||||||||| | Sbjct 137476 TTTCTTTAGGATCTTTTATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 137535 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || ||||| || ||||| || || | ||||| | | ||||||||| Sbjct 137536 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGACTTGTACTTC 137590 >seq8067 Length=36449 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | || || || || ||||| |||||||||| |||| || | Sbjct 28358 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 28417 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||||||||| || ||||| | |||||||||||| || ||||| || || ||||| | Sbjct 28418 TGAGCCAAAATATTGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACG 28477 Query 16377 CAACCAATCGCTCACC 16392 |||||| || ||||| Sbjct 28478 CAACCACTCTTTCACC 28493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| |||||||| ||||||||||| || || |||| ||| || ||||||||||| Sbjct 30510 ATGTAAGTGTCTATTAGCAAACTATACATCTCGGAGTGAACATTTTCTATTGCTATCTGG 30569 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | |||||| | || |||||||| Sbjct 30570 AAGCCATAGAAACAGCGAGCTTCTGGGATCTGTACTTC 30607 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 15890 AAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGA 15949 || ||| ||||| || ||| || |||| ||| || | |||||||| | |||| Sbjct 24017 AAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTTAGCCATAACTGCAAAACGTTGA 24076 Query 15950 TATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATA 16009 || || ||| ||| | ||||||||||| ||||||||||| | |||||| || ||||| Sbjct 24077 TACTCTGAAACCCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGTGAAATGTTCTCCATG 24136 Query 16010 AAATCAAAAGGATTTTTTG 16028 || |||||||| |||| || Sbjct 24137 AAGTCAAAAGGGTTTTCTG 24155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462285872101800