Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1724 480 6e-131 seq4806 107 1e-18 >seq1724 Length=232407 Score = 480 bits (532), Expect = 6e-131 Identities = 819/1171 (70%), Gaps = 25/1171 (2%) Strand=Plus/Plus Query 107462 CCAGAG-TCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTG-CCAGCAAAGAGA 107519 |||||| || | ||| | ||||| | ||||| | ||| ||| || ||| |||| Sbjct 119547 CCAGAGGTCGGTTCTGCAAGGACAGGCTGTACCAGTCAGTGAGGCTCTCCCCCAAGGAGA 119606 Query 107520 TCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCC-CTCC- 107577 | |||| ||| |||||||||| ||||||||| | ||| | | |||||| ||| Sbjct 119607 AC-ATCAGCTGCTCTGGGATCAGCCGAGGGGAC-ATAAAG--GCGATCCAGGGAGCTCTG 119662 Query 107578 TAGA-CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAAC 107636 | || ||| ||| || |||||| |||||| | | | || | || ||| | ||| Sbjct 119663 TTGAGCAAGCTGCAATGGAAGAACAAGCGGGTGTCCTTAGATGAGAAGTACTACTTGAAC 119722 Query 107637 ATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA---AGTTCATACAGTTCCCACTG 107693 |||||| || |||||| |||||| | |||||| | ||||| |||||| ||| Sbjct 119723 CTAACCAAGGATTGTGAGACCTTCAAAG---AAAGGAGAAAATTCATTGGGTTCCCCCTG 119779 Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| |||| || | ||||||| ||||| || || ||||| |||||||||||||||| Sbjct 119780 AGTGAAGAGGAAGAAAACTTCCCTATTGCTTATTCCATGGTTATCCATGAGAAGATTGAG 119839 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 |||||| || | ||| || || | | ||| ||||| ||| ||||||||||||||||| Sbjct 119840 GTATTTGAAAGGTTACTGAGATCCATCTTTGCTCCTCAAAACGTATACTGTGTCCACGTG 119899 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || || || || ||||| || |||| ||| ||| ||| |||||||| | Sbjct 119900 GACAGCAAATCTCCTGAACCTTTCCAAAAGGCCGTCCGGGCAATTGCCTCCTGCTTTGAC 119959 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||| || |||| |||| || | ||||| || ||||| ||||| || || ||| Sbjct 119960 AATGTTTTTCTGGCATCTAAGCAGGAGCGTGTGGTGTACGCCTCTTGGTCAAGGGTCCAA 120019 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTG 107993 || ||| ||||||| ||||||||| |||| || ||| |||| |||| |||| | ||| Sbjct 120020 GCCGACTTGAACTGCATGGAAGACCTGCTTCAAAGCAAGGTGCGTTGGAGGTACCTCCTG 120079 Query 107994 AATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAG 108053 ||||| || ||||| |||||||| || ||||||||||| ||||| |||| ||||| || Sbjct 120080 AATACCTGTGGGACTGACTTCCCTATCAAGACCAATGCAGAGATTGTCCAAGCCCTAAAA 120139 Query 108054 ATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGC 108113 || |||| || || |||| |||||||| ||| |||||| || |||||| || ||| Sbjct 120140 CTGCTGAATGGGAAAAACAACATGGAGTCCGAGAAGCCTTCTTCGTACAAAAAGAACCGC 120199 Query 108114 TGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCT 108173 |||||||| | || || ||||| || | | | ||| | || ||| ||| Sbjct 120200 TGGAAATATCACTTCGAAGTGACTGATTCCGTCATTCAGACCCAGACCATAAAGAGCCCC 120259 Query 108174 CCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTT 108233 || || | | | ||||||||||| || | ||| ||| |||||| | | | | ||| Sbjct 120260 CCTCCCCAAAGCTCTCCCATGTTCACTGGAAGTGCTTATATTGTGGTCACCAGGGAGTTT 120319 Query 108234 GTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC---TGGTTGAATGGGTCAAAGAC 108290 ||||| || |||| | |||| | | ||||| || | |||||| |||||| Sbjct 120320 GTCCAGCACATCTTTAAAGACCCGA---CTGCAAGACAGTTGATAGAATGGTCCAAAGAT 120376 Query 108291 ACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA--GCGTGCTCCGTGGATGCCTG 108348 || || || || || || || || ||||||||| | || || |||| | || | |||| Sbjct 120377 ACGTACAGTCCGGATGAGCATCTTTGGGCCACCTTGCATCGCATGCT-AGGGGCT-CCTG 120434 Query 108349 GCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCG 108408 |||| || ||| | ||||||| || || | ||||||| |||| || ||||| | Sbjct 120435 GCTCGGTCCCTTTTAATGACAAGTATGACCTCACTGACATGAACTCCATTGCGAGGCTGG 120494 Query 108409 TCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTG 108468 | |||||| ||| | || || |||||| ||| || ||||| || |||| |||| Sbjct 120495 TGAAGTGGTCCTACGTTGGCGGGGACCTCAGCAAGGGAGCCCCTTACTCATCCTGTTCTG 120554 Query 108469 GAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA 108528 |||| | | | |||||||||| || || || |||||||| ||||| | ||| Sbjct 120555 GAATTTACCAGCGGGCCATCTGTATCTATGGATTTGGGGACCTCCACTGGCTACTCGCAC 120614 Query 108529 ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCT 108588 | || ||||| | || |||||||| ||||| || | |||||| ||| | ||||| | Sbjct 120615 AGCACCACCTGCTTGCCAACAAGTTCGACCCCAGCATTGATGATTACGCAATCCAGTGTT 120674 Query 108589 TAGAAGAGTACCTACGTCATAAGGCCATCTA 108619 | |||||||| || || | ||||| ||||| Sbjct 120675 TGGAAGAGTATCTGCGCTACAAGGCGATCTA 120705 >seq4806 Length=94900 Score = 107 bits (118), Expect = 1e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || |||||||| ||| || |||||||| || || || ||||| || | || Sbjct 47028 CCTCTTAGCAAAGAAGAAGCAGAATTTCCCATTGCATATTCAATAGTGGTTTATCATAAA 47087 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||| | |||| |||| ||| || || | ||||| ||||||||| ||||| | Sbjct 47088 ATTAGTATGCTTGAGAGGCTTCTGAGAACCATATATGCTCCTCAGAACTATTACTGCATT 47147 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || |||||||||||| ||||| || || || | ||| || || Sbjct 47148 CATGTTGACAAAAAGTCCCCAGAGTCTTTCTTGACAGCTGTAAAAGGAATTGCATCATGT 47207 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || | |||||||||||| ||||| | ||| || || ||||| |||||| ||| Sbjct 47208 TTTCACAATGTCTTCATTGCCAGCCAACTGGAGAGTGTAGTGTATGCATCCTGGAGCAGG 47267 Query 107928 GTGCAAGCTGACCTGAA 107944 |||||||||||||| || Sbjct 47268 GTGCAAGCTGACCTCAA 47284 Score = 86.0 bits (94), Expect = 4e-12 Identities = 247/372 (66%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 108188 ACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT-CTCGAGCCTTTGTCCAACATGTCT 108246 |||||| ||| | || | |||||||||||| | | | ||| ||||| || |||| | Sbjct 47669 ACCCATTTTCTCTGGCAGTGCCTATTTTGTTGTCAGCAGGAGG-TTTGTGGAATATGTAT 47727 Query 108247 TAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACG 108306 |||| ||| ||| | | | || |||| |||||||| || || || || | Sbjct 47728 TAGAGAACAGAAAAATTCTTGCTTTTATGGAGTGGGCTAAAGACACGTACAGTCCTGATG 47787 Query 108307 AACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG-GATGCCTGGCTCTGTTCCTAGCCAC 108365 || | | ||||| || ||||||| ||| || | | ||||| | || ||| |||| Sbjct 47788 AATTCTTATGGGCAACAATTCAGCGAA-TCCCTGAGGTTCCTGGTGCAGTCCCT-GCCAG 47845 Query 108366 CC-CAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCA 108424 ||| || | | || || |||| ||| || ||| || | || |||||||| ||| Sbjct 47846 TGACAAATACGATGTTTCTGATATGAATGCAATTGCCCGGTTTGTGAAGTGGCATTACTT 47905 Query 108425 CGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGC 108484 ||||| ||||| || ||| || |||||| | ||||| |||| |||| | | Sbjct 47906 TGAGGGGGATGTGTCCAAGGGTGCCCCTTATCCCCCCTGTAATGGAGTCCACGTCCGCTC 47965 Query 108485 CATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGC 108544 || || | | || | || ||| || |||||| | ||||| ||||| |||| || Sbjct 47966 TATATGTGTCTTTGGAGTTGGAGACTTGAGCTGGATGTTACAGAAACATCATTTCTTTGC 48025 Query 108545 AAACAAGTTTGA 108556 ||||||||||| Sbjct 48026 CAACAAGTTTGA 48037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348102783854562