Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2308 120 4e-22 seq3601 102 1e-16 seq8067 93.3 5e-14 >seq2308 Length=189564 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | || |||||||| || || || |||||||| || || || | Sbjct 135512 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGGCCAGGCATTAGCCCTCGTTTCT 135571 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| || || || || || ||||||||||||||||| ||||||||||| | Sbjct 135572 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 135631 Query 33724 C 33724 | Sbjct 135632 C 135632 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33832 TTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 |||| ||| |||||| | ||||||||| || | | |||||||||||| |||||||||| Sbjct 137476 TTTCTTTAGGATCTTTTATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 137535 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 |||| ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 137536 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGACTTGTACTTCT 137591 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| || ||||| |||| ||||| || ||||| ||||| || || |||||||| ||| Sbjct 133901 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 133960 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || ||||| |||||||||||||| ||||| Sbjct 133961 TCCAGAGAGATATTCTCCATGAAATCAAATGGATT 133995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||||||||| |||||||| || || ||||| | |||||||||||| Sbjct 141301 CACCTCTTCAGCTGTCCAAAATGAGGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 141360 Query 34139 ATATTGGATTGGGAAAATAACAAA 34162 ||||| || ||||| || ||||| Sbjct 141361 GTATTGAATAGGGAAGATGACAAA 141384 >seq3601 Length=132737 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | || |||||||| ||||| || || || | || ||||| |||||||||| Sbjct 114699 CACTGAAGACCTTCTTTGTTTCTTTGTGCAGGTTGGAGACAGCGATTCTCGCGGCTAGAA 114640 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||| || || || | | || || ||||||||| | || || ||||| ||||||| Sbjct 114639 TGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCTGCGGTCTCTGCAGCCAGCGTGTCCA 114580 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64179 |||||| |||||||| || | || | || || || |||||||| | |||| Sbjct 114579 GTTCTACGGTTGTTACCCCGCTGTAGAGACCCTGGATCACCTTCATGGTGATTT 114526 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTC 63321 || ||| ||||||||||||||||| || ||||| ||||| ||| || || || | | | Sbjct 120269 CTCCACACGTTTCATAAAGAGATCTGGGATCCAGAGAGC-ATAGAAAAGGTCCCGAGCCC 120211 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | || ||||| || || || || || || | ||||| ||| | | | |||| | |||| Sbjct 120210 TCTGCTCCTCCTTCCCAGTGTTTTTCTTCAAGTCGAGAAACTCAAAGACATCAAAGTGCC 120151 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 | ||||||| ||| ||||| | ||||||| Sbjct 120150 ATGGTTCCAGGTAGATGGCAAAGGCTCCAGG 120120 >seq8067 Length=36449 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | ||| || || || || || || ||||||| || | ||| || Sbjct 28360 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 28419 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | || || | || ||||||||||||||||| || |||||||| ||| Sbjct 28420 AGCCAAAATATTGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 28479 Query 33726 ATAAGTCTCTCTCC 33739 | | ||| || || Sbjct 28480 ACCACTCTTTCACC 28493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629509674302640