Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2308 114 2e-20 seq3601 111 2e-19 seq8067 98.7 1e-15 seq91 98.7 1e-15 >seq2308 Length=189564 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||||||||| | || || ||||| || || || |||||||| || || || | Sbjct 135512 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGGCCAGGCATTAGCCCTCGTTTCT 135571 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 135572 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 135631 Query 36300 C 36300 | Sbjct 135632 C 135632 Score = 96.9 bits (106), Expect = 5e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 36408 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 |||| ||| |||||| | ||| |||||||| | | |||||||||||| |||||||||| Sbjct 137476 TTTCTTTAGGATCTTTTATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 137535 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 |||| ||||| || || || || |||||||| | || || || | ||||||||| Sbjct 137536 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGACTTGTACTTCT 137591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| || ||||| |||| ||||| || ||||| ||||| || || |||||||| ||| Sbjct 133901 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 133960 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATT 35946 || | || ||||| ||||||||||| |||||||| Sbjct 133961 TCCAGAGAGATATTCTCCATGAAATCAAATGGATT 133995 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| ||||| ||||||||||||| |||||||| || || ||||| | |||||||||||| Sbjct 141301 CACCTCTTCAGCTGTCCAAAATGAGGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 141360 Query 36715 ATATTGAATTGGAAAAATAACAAA 36738 |||||||| || || || ||||| Sbjct 141361 GTATTGAATAGGGAAGATGACAAA 141384 >seq3601 Length=132737 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | || |||||||||||||| || || || || || ||||| ||||||| || Sbjct 114699 CACTGAAGACCTTCTTTGTTTCTTTGTGCAGGTTGGAGACAGCGATTCTCGCGGCTAGAA 114640 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||| || || || | | || || ||||||||| | || || ||||| ||||||| Sbjct 114639 TGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCTGCGGTCTCTGCAGCCAGCGTGTCCA 114580 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 |||||| |||||||| || | || | || ||||| |||||||| | |||| Sbjct 114579 GTTCTACGGTTGTTACCCCGCTGTAGAGACCCTGGATCACCTTCATGGTGATTT 114526 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| ||||| || ||||| | || | || ||||| || || ||||| || || ||||| Sbjct 125539 TACCTGAAACTCCCCAGAGAGAACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCAC 125480 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 65293 ||||||||| || |||||||| ||||| || || || || ||||| || ||||| Sbjct 125479 AGACTCATTGTTGCCCAAAATCTGAGCCGTGGAAGCTGTTGGCATCGGGGCCAC 125426 >seq8067 Length=36449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||||| | ||| ||||| || || || || ||||||| || | ||| || Sbjct 28360 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 28419 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||| | ||||| | ||||||||||| |||||||| || || ||||| ||| Sbjct 28420 AGCCAAAATATTGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 28479 Query 36302 ATAAGTCTCTCTCC 36315 | | ||| || || Sbjct 28480 ACCACTCTTTCACC 28493 >seq91 Length=696166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTC---CAAAAGCTGTAACAGATGCAAGAACAGATTGATGAT 9283 ||| || |||||| || |||| |||| || | ||| ||||| |||||||||| ||| Sbjct 392771 TTACTTTTTATTAAATGCTTCTAGCAAACGCAG---CAGGTGCAAAAACAGATTGAGGAT 392827 Query 9284 ATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAG 9343 ||||| || | ||||| | || | | || |||||||| ||||| || || |||| Sbjct 392828 GTCCAAATAAAGGTTGATTGCAGCCAGTATGTATTCTTCAGGGGAGAGTTTGTGCATTAA 392887 Query 9344 TGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGAC 9403 | || ||||||||||| || ||||| ||||| | || || || ||||| | || Sbjct 392888 TAGATGAGTGTCATAGATGATAAATCCACAGAACAGAAATGCTCCTGCAGCAGCAAATAC 392947 Query 9404 CAGCTCCACTGTTTCA 9419 |||||| ||| |||| Sbjct 392948 CAGCTCTACTACTTCA 392963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657851011090920