Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6119 114 1e-20 seq6913 100 3e-16 seq7460 98.7 1e-15 >seq6119 Length=68287 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||||| || | || | || ||||| || || || ||||| || Sbjct 55737 GCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGA 55678 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| ||||| || |||||| ||||||| | |||||||||||||| Sbjct 55677 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 55618 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| || ||||| | || | ||||| | |||||||| Sbjct 55617 AATGCCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCACTTGGCTCCAC 55558 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| |||||||| || || || || ||||| Sbjct 55557 TTCCAGGGTGATGGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCAT 55510 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||||| || | || | || ||||| || || ||||| || || Sbjct 55965 GCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 55906 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| || |||||| ||||||| | |||||||||||||| Sbjct 55905 AAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 55846 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| || || | | || | ||||| | |||||||| Sbjct 55845 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCAC 55786 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||||| || || || || || ||||| Sbjct 55785 CTCCAGAGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 55738 >seq6913 Length=53205 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 52765 AAACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGG 52824 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| || |||||| ||||||| | ||||| || ||||| |||||||| Sbjct 52825 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 52884 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | |||||| | ||||||||||| | ||| Sbjct 52885 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCCACCTCCAGGGTG 52944 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| || || || || || ||||| Sbjct 52945 ATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 52982 >seq7460 Length=44690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 44285 CCACCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 44226 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| ||||||| | ||||| || ||||| Sbjct 44225 AGCGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 44166 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 44165 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCCACC 44106 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || ||||| || || || || || ||||| Sbjct 44105 TCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||| ||||| || ||| Sbjct 44483 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCA 44424 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || ||||| |||||||| ||||| ||| || || Sbjct 44423 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 44364 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | ||||||||||| | ||| | ||||| || ||||| || Sbjct 44363 ACGTTCTCAATGGTGTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTC 44304 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 44303 TTCACAAAGATCTGCAT 44287 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| ||||||| | ||||| || ||||| |||||||| ||| Sbjct 44669 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTG 44610 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| | ||||||||||| | ||| | Sbjct 44609 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCCACCTCCAGGGTGATG 44550 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || || ||||| Sbjct 44549 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495821468109600