Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2308 123 3e-23 seq3601 116 5e-21 seq8067 107 3e-18 >seq2308 Length=189564 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||||||||| | || || ||||| || || || |||||||| || || || | Sbjct 135512 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGGCCAGGCATTAGCCCTCGTTTCT 135571 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 135572 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 135631 Query 42207 C 42207 | Sbjct 135632 C 135632 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42315 TTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 |||| ||| |||||| | ||| ||||| || | | ||||||||||||||||||||||| Sbjct 137476 TTTCTTTAGGATCTTTTATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 137535 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 |||| ||||| ||||| || || |||||||| | ||| || || || ||||||||| Sbjct 137536 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGACTTGTACTTCT 137591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| || ||||| |||| ||||| || ||||| ||||| || || ||||| || ||| Sbjct 133901 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 133960 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || ||||| |||||||||||||| ||||| Sbjct 133961 TCCAGAGAGATATTCTCCATGAAATCAAATGGATT 133995 >seq3601 Length=132737 Score = 116 bits (128), Expect = 5e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | || |||||||| ||||| || || || || || ||||| |||||||||| Sbjct 114699 CACTGAAGACCTTCTTTGTTTCTTTGTGCAGGTTGGAGACAGCGATTCTCGCGGCTAGAA 114640 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || || || | | || || ||||||||| | ||||| ||||| ||||||| Sbjct 114639 TGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCTGCGGTCTCTGCAGCCAGCGTGTCCA 114580 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 |||||| |||||||| || | || | || ||||| |||||||| | |||| Sbjct 114579 GTTCTACGGTTGTTACCCCGCTGTAGAGACCCTGGATCACCTTCATGGTGATTT 114526 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 |||||| ||||| || || ||||||||||||||||| | || || ||||| ||||| Sbjct 122451 AATTTCGGTGCACAGGTTGCTACACTTGATGGTTCCGAGGTTCTGCTGATTGCTCTTCCG 122392 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||| || | |||||||||||| || |||| || || || || |||| || || || || Sbjct 122391 GTTGCAAGAATCCTTATAAAGCATGTACGGCGTTCCCGTCTCCGTCTGCGACTCAATGAT 122332 Query 71871 CGCTTTCCA 71879 || | ||| Sbjct 122331 GGCGTACCA 122323 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 72080 || ||||||||||||||||| || ||||| ||||| ||| || || || | | || || Sbjct 120265 ACACGTTTCATAAAGAGATCTGGGATCCAGAGAGC-ATAGAAAAGGTCCCGAGCCCTCTG 120207 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 |||||| || || || || || || | ||||| ||| | | | |||| | ||||| || Sbjct 120206 CTCCTCCTTCCCAGTGTTTTTCTTCAAGTCGAGAAACTCAAAGACATCAAAGTGCCATGG 120147 Query 72141 TTCCAAGTATATGGC 72155 ||||| ||| ||||| Sbjct 120146 TTCCAGGTAGATGGC 120132 >seq8067 Length=36449 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| ||||| | ||| ||||| || || || || ||||||| || | ||| || Sbjct 28360 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 28419 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||| | ||||| | |||||||||||||||||||| || || ||||| ||| Sbjct 28420 AGCCAAAATATTGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 28479 Query 42209 ATAAGTCTCTCTCC 42222 | | ||| || || Sbjct 28480 ACCACTCTTTCACC 28493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670811071655880