Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5783 176 1e-38 seq6119 172 1e-37 seq7460 147 5e-30 seq8067 96.9 8e-15 seq3991 96.9 8e-15 seq2308 93.3 1e-13 >seq5783 Length=75334 Score = 176 bits (194), Expect = 1e-38 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| ||||||||||| || || || ||||| || || || || || || | ||||||| Sbjct 48196 GAGCGTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAGTGTTCTTCA 48137 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 ||||| ||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 48136 TCCTAAGAAAGAAATTTAATCAAATCAGTTTTCTTCATGTCTATCACCATTTCACTATGT 48077 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||||| | ||||| || || |||||| | ||||||||||||| Sbjct 48076 TTACTTTGTGGTGGATTGGCATAAAATGGGTTGCAGGAGGACAAG 48032 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 78649 AGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTATTACGG 78708 ||| ||| | |||||| | || ||| | ||| | || ||| ||||||||| || || || Sbjct 46587 AGCATTTTTTGGAGCTCATATGAATGCTTTCATTCATGTTGTTATGTATATGTACTATGG 46528 Query 78709 TATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTTACTAT 78768 | ||||| || ||||| | ||| | ||||| | ||||||||| ||||| | || || Sbjct 46527 ACTAGCTGCCTGTGGCCCAAAATTCCACAAGTACCTTTGGTGGAAGCGATATTTGACCAT 46468 Query 78769 AATGCAATT 78777 ||||||||| Sbjct 46467 AATGCAATT 46459 >seq6119 Length=68287 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || || || ||||| |||||||||||| Sbjct 55739 ATGCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATATTATAGTCA 55680 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| ||||| ||| Sbjct 55679 GAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGA 55620 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| ||||||||||| || | ||| || || || || Sbjct 55619 GGAATGCCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCACTTGGCTCC 55560 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| || || | || || ||||| ||||||||||| Sbjct 55559 ACTTCCAGGGTGATGGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATTTT 55507 >seq7460 Length=44690 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || ||||| || || || ||| Sbjct 44255 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCA 44196 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || ||||| || ||||| ||||| || || Sbjct 44195 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 44136 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| || || ||||| || || || ||||| ||||| | || Sbjct 44135 ACGTTCTCAATGGTGTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTC 44076 Query 104543 TTTACAAATATCTGCATTTTGTGTACAGT 104571 || ||||| ||||||||||| | | |||| Sbjct 44075 TTCACAAAGATCTGCATTTTCTCTGCAGT 44047 >seq8067 Length=36449 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| |||||||| || ||||| | ||||| || || ||||||||||| ||||||||| Sbjct 30610 CAAGAAGTACAGATCCCAGAAGCTCGCTGTTTCTATGGCTTCCAGATAGCAATAGAAAAT 30551 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||| || |||||||| ||| | ||||||| ||||| || Sbjct 30550 GTTCACTCCGAGATGTATAGTTTGCTAATAGACACTTACAT 30510 >seq3991 Length=124748 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||||||||| ||||| || |||||||| | || || ||||| || ||||| Sbjct 44349 CCTTCCTTATCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTAGGCTCCACCTCA 44290 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| || ||||| ||||| ||||||||| || Sbjct 44289 AGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTGTG 44242 >seq2308 Length=189564 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| | ||||| ||||| | | |||||| | ||||| || || |||||||| || || Sbjct 137599 TTCAGCCAAGAAGTACAAGTCACAGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCATG 137540 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 ||||| ||||||||||| ||||| ||| || | || |||||||||||| | ||| Sbjct 137539 GAAAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTATATAAAAGAT 137486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150821393603004