Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6913 120 3e-22 seq7460 107 2e-18 seq6119 104 2e-17 >seq6913 Length=53205 Score = 120 bits (132), Expect = 3e-22 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||| | || || ||||| |||| |||| ||| | || || ||||| || | | Sbjct 52744 AAAGTTTAAAAACCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATG 52803 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | ||| | ||| |||||||| || || ||||||| | || ||| Sbjct 52804 TTGTAGTCGGAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 52863 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || |||||||| ||||| ||||| | || || ||||||||| | | ||||| Sbjct 52864 TGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC- 52922 Query 94949 GCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||| || || || | |||||||| || ||||| | || ||||||||||||||||| Sbjct 52923 GCTTGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 52982 >seq7460 Length=44690 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | || || ||||| || | ||| || ||| | ||| | | Sbjct 44273 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCA 44214 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || |||||||| ||||| ||| Sbjct 44213 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTG 44154 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || || ||||||||| | | ||||| || ||| || || || | ||||| Sbjct 44153 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCCACCTCCAGGGTGAT 44095 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | || ||||||||||||||||| Sbjct 44094 GGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44059 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || ||| ||||||| | || ||||| || |||||||| ||||| || Sbjct 44670 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTT 44611 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | || || ||||||||| | | ||||| || ||| || || || | |||| Sbjct 44610 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCCACCTCCAGGGTGA 44552 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | || ||||||||||||||||| Sbjct 44551 TGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44515 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 94800 CCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 ||| ||| | || || ||||| || | ||| || ||| | ||| | ||| |||| Sbjct 44494 CCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCTTCCA 44435 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || ||||||| | || ||||| || |||||||| ||||| ||||| | | Sbjct 44434 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGA 44375 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTT 94978 | || ||||||||| | | ||||| || ||| || || || | |||||||| || Sbjct 44374 TCTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCCACCTCCAGGGTGATGGTCTTC 44316 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||||||||||||||| Sbjct 44315 CCAGTCAAGGTCTTCACAAAGATCTGCAT 44287 >seq6119 Length=68287 Score = 104 bits (114), Expect = 2e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || || ||||||| | || |||||||| |||||||| |||||||| Sbjct 55893 ATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTT 55834 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | || || ||||| || | | |||||| | ||| || || || | |||| Sbjct 55833 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCA-CTTGGCTCCACCTCCAGAGTGA 55775 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || || || || || || |||||||||||||||| Sbjct 55774 TGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCATGC 55736 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| || | || | || || ||||| || | ||||| || Sbjct 55736 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGAA 55677 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || || ||||||| | || |||||||| |||||| Sbjct 55676 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 55617 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||||||||| | || || || || || | | |||||| | ||| || || Sbjct 55616 ATGCCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCA-CTTGGCTCCAC 55558 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||||||||||||||| Sbjct 55557 TTCCAGGGTGATGGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCAT 55510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448072024828680