Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13811 179 6e-41 seq1203 165 1e-36 seq7113 159 5e-35 seq930 156 7e-34 seq5777 116 6e-22 >seq13811 Length=2076 Score = 179 bits (198), Expect = 6e-41 Identities = 188/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||||||||||||||| || || ||||| ||||| || || ||||||| ||||| Sbjct 1220 CTCCGAGATAACATCCAAGGCATTACGAAGCCGGCTATTCGCCGCTTGGCTCGCCGTGGA 1279 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||| ||| |||| ||||||| ||||| || |||||| | || Sbjct 1280 GGCGTGAAGCGAATTTCTGGGTTGATCTACGAAGAGACTCGTGGAGTGTTGAAGGTATTT 1339 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||||||| ||||| | ||| ||||||||||| ||| | ||||| || Sbjct 1340 CTGGAGAACGTTATCCGGGATGCCGTGACCTACACCGAGCACGCCAAAAGGAAGACCGTG 1399 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| |||| || || ||||||| | ||||| |||||| Sbjct 1400 ACGGCCATGGATGTAGTGTATGCCCTGAAGCGCCAGGGCCGTACCTTGTATGGCTTTGGA 1459 Query 16694 AGTTAAT 16700 | |||| Sbjct 1460 GGCTAAT 1466 >seq1203 Length=291960 Score = 165 bits (182), Expect = 1e-36 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || || ||||||||||| || ||||| |||||||||||||| || Sbjct 55579 CTTCGCGATAACATTCAGGGCATCACCAAGCCGGCGATCCGCCGTCTGGCTCGTCGCGGA 55520 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || || || ||||||| |||| ||| | || ||||| |||| Sbjct 55519 GGCGTGAAGCGTATTTCGGGTCTGATCTATGAGGAGACTCGCGGCGTCCTGAAGGTCTTT 55460 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| ||||| | ||| ||||||||||| || | ||||| ||| Sbjct 55459 TTGGAGAACGTGATCCGGGATGCCGTGACCTACACCGAGCACGCCAAGAGGAAGACGGTC 55400 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | |||||||| ||||| || || ||||| Sbjct 55399 ACCGCCATGGACGTGGTCTATGCCTTGAAGCGCCAGGGCCG 55359 Score = 104 bits (114), Expect = 4e-18 Identities = 133/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || || ||| ||||||| | ||||| ||||||||||||||||| Sbjct 81272 CTTCGCGATAACATTCAGGGCATCGCCAAGCCGGTAATCCGCCGTCTGGCTCGTCGTGGA 81213 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || | || || || ||||||| |||| ||| | || ||||| |||| Sbjct 81212 GGCGTGAAACGAATTTCGGGTCTGATCTATGAGGAGACTCGCGGCGTCCTGAAGGTCTTT 81153 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | ||| |||| ||||| | ||| ||||||||||| | | | ||| ||| Sbjct 81152 CT---GGACGTGATCCGCGATGCCGTGACCTACACCGAGCACGCCAGGAGGAGGACGGTC 81096 Query 16634 ACC 16636 ||| Sbjct 81095 ACC 81093 >seq7113 Length=50495 Score = 159 bits (176), Expect = 5e-35 Identities = 197/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || ||||| | ||||||||| || ||||| ||||| || || Sbjct 5430 GCCAAGCGGCACCGCAAGGTC-CTTCGTGCTAACATCCAGGGTATCACGAAGCCTGCCAT 5372 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||||||||| ||||| ||||| | ||||| | |||| || |||| Sbjct 5371 CCGCCGCTTGGCTCGTCGTGGGGGAGTGAAGCGGATATCTGGGCTCATCTACGAGGAGAC 5312 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||||| ||| | || | ||| |||||||| ||||| | ||| || || Sbjct 5311 TCGCGGCGTTTTAAAGGTGTTTTTGGAGAACGTTATCCGGGATGCGGTTACCTACACTGA 5252 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| || || |||||||| |||| || || |||||||| ||||| Sbjct 5251 ACACGCCAAGAGGAAGACGGTGACGGCCATGGATGTCGTTTACGCTTTGAAACGCCAAGG 5192 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | | || |||||||| |||| Sbjct 5191 TCGCACGTTGTACGGTTTTGGTGGTTA 5165 >seq930 Length=319869 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | | || || |||||||| || || || ||||| || || Sbjct 91754 CGCTAAGCGCCACCGCAAAGTGTTGCGGGACAACATCCAGGGCATTACTAAGCCTGCGAT 91813 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||||||||| ||||| |||||| ||||||| ||| ||||||| |||| Sbjct 91814 TCGCCGCTTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCTGGCTTGATCTATGAGGAGAC 91873 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || || | | ||| |||| ||||| | || ||||| Sbjct 91874 TCGCGGGGTGCTGAAGGTTTTTCTGGAAAACGTCATCCGGGATGCCGTGACTTACACCGA 91933 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| |||| || || |||| || ||||| Sbjct 91934 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTCGTGTACGCTCTGAAGCGCCAAGG 91993 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| | || || ||||| Sbjct 91994 CCGTACTCTGTACGGATTTGG 92014 Score = 96.9 bits (106), Expect = 5e-16 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || || || ||||| || || || || ||||||||||||| ||| Sbjct 76414 CGGGACAACATCCAGGGCATTACTAAGCCTGCGATTCGCCGCTTGGCTCGTCGTGGCGGA 76355 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| ||||||| ||| ||||||| |||| ||| | || ||||| | || || Sbjct 76354 GTGAAGCGTATCTCTGGCTTGATCTATGAGGAGACTCGCGGGGTGCTGAAGGTTTTTCTG 76295 Query 16577 AAGACCGTTATCC 16589 | | ||| |||| Sbjct 76294 GAAAACGTCATCC 76282 >seq5777 Length=73217 Score = 116 bits (128), Expect = 6e-22 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || || || || |||||||| || || Sbjct 13334 CTCCGGGATAACATCCAGGGCATCACGAAGCCCGCCATTCGCCGACTGGCTCGGCGCGGG 13393 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || || | |||| || || | || | || |||||| ||||| Sbjct 13394 GGCGTCAAGCGCATTTCGGGGCTCATCTACGAGGAAACGCGAGGCGTCTTGAAGGTCTTC 13453 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| |||| || || | || || |||||||| || | ||||| ||| Sbjct 13454 CTGGAAAACGTGATCCGGGACGCCGTGACTTACACGGAGCACGCGAAGAGGAAGACGGTC 13513 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||||| | |||||||| |||| || |||||| Sbjct 13514 ACGGCCATGGACGTGGTCTATGCCCTGAAGCGCCAAGGC 13552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79039438710309