Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2308 123 3e-23 seq8067 107 2e-18 seq3601 107 2e-18 >seq2308 Length=189564 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||| || || || ||||| || || || |||||||| || || || | Sbjct 135512 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGGCCAGGCATTAGCCCTCGTTTCT 135571 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| || || || || |||||||||||||||||||| ||||||||||| | Sbjct 135572 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 135631 Query 33446 C 33446 | Sbjct 135632 C 135632 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33554 TTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 |||| ||| |||||| | ||||||||| || | | |||||||||||| |||||||||| Sbjct 137476 TTTCTTTAGGATCTTTTATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 137535 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 |||| ||||| ||||| || || |||||||| | || || || | ||||||||| | Sbjct 137536 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGACTTGTACTTCTTGGC 137595 Query 33674 AAAATCGTTCCGCC 33687 ||||| ||| || Sbjct 137596 TGAATCGCTCCACC 137609 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/145 (77%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 32953 TTTCTTTAA-AAGTCAACATCTAAAGAAAAATGA-TTATCTTCTTGA---GACATAACTC 33007 ||||||| | || || |||| |||| || ||| |||||| | | ||||| || | Sbjct 133852 TTTCTTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGGCTTGACATCACAC 133910 Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067 |||| |||| ||||| || ||||| ||||| || || |||||||| ||||||| || | Sbjct 133911 CCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGA 133970 Query 33068 TATTTTCCATGAAATCAAACGGATT 33092 |||| |||||||||||||| ||||| Sbjct 133971 TATTCTCCATGAAATCAAATGGATT 133995 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 || ||||| ||||||||||||| |||||||| || || ||||| | ||||||||||| Sbjct 141302 ACCTCTTCAGCTGTCCAAAATGAGGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 141361 Query 33862 TATTGGATTGGGAAAATAACAAA 33884 ||||| || ||||| || ||||| Sbjct 141362 TATTGAATAGGGAAGATGACAAA 141384 >seq8067 Length=36449 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| ||||| ||||| ||||| || || || || ||||||| || | ||| || Sbjct 28360 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 28419 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||| | || || | |||||||||||||||||||| || |||||||| ||| Sbjct 28420 AGCCAAAATATTGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 28479 Query 33448 ATAAGTCTCTCTCC 33461 | | ||| || || Sbjct 28480 ACCACTCTTTCACC 28493 >seq3601 Length=132737 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | || |||||||| ||||| || || || || || ||||| |||||||||| Sbjct 114699 CACTGAAGACCTTCTTTGTTTCTTTGTGCAGGTTGGAGACAGCGATTCTCGCGGCTAGAA 114640 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||| || || || | | || || ||||||||| | || || ||||| ||||||| Sbjct 114639 TGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCTGCGGTCTCTGCAGCCAGCGTGTCCA 114580 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64128 |||||| |||||||| || | || | || || || |||||||| | |||| Sbjct 114579 GTTCTACGGTTGTTACCCCGCTGTAGAGACCCTGGATCACCTTCATGGTGATTT 114526 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTC 63270 || ||| ||||||||||||||||| || ||||| ||||| ||| || || || | | | Sbjct 120269 CTCCACACGTTTCATAAAGAGATCTGGGATCCAGAGAGC-ATAGAAAAGGTCCCGAGCCC 120211 Query 63271 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63330 | || ||||| || || || || || || | ||||| ||| | | | |||| | |||| Sbjct 120210 TCTGCTCCTCCTTCCCAGTGTTTTTCTTCAAGTCGAGAAACTCAAAGACATCAAAGTGCC 120151 Query 63331 ACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 | ||||||| ||| ||||| | ||||||| Sbjct 120150 ATGGTTCCAGGTAGATGGCAAAGGCTCCAGG 120120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622642633327080