Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3009 161 1e-34 >seq3009 Length=154878 Score = 161 bits (178), Expect = 1e-34 Identities = 207/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| ||||||||||| || ||||| || | || || || ||||| ||||| Sbjct 28441 GGACAGCCCTTCACATTATTGCAGATGAGTCTTTGGAGGGAGGCTGTATTCACAATGTCA 28500 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || || || || || || || |||||||| | || ||||||||| | || Sbjct 28501 AAGCCCACTCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGCGAGCAGATGGCATTT 28560 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || |||||||| || || || ||| ||||||| |||||| Sbjct 28561 CCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTCTCACCAAAGATG 28620 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || || ||||| || ||||| || | |||| ||| ||| ||||| | ||| || | || Sbjct 28621 GCTCCAGGACGTGGCTTTTCAAC-AAGAAGAGCAGGGTACAGTTCCATAGCTTCAATATC 28679 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| |||| | || ||||| || || || |||||| Sbjct 28680 TCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCT 28722 Score = 109 bits (120), Expect = 8e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 ||||| ||||| | || || ||| ||||||| |||||||| || |||| || ||| Sbjct 31327 GTGGTCTGAAATAGTTGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGAATGTCACAG 31386 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | |||||||| | ||||| | ||||| |||||||| | || || || || ||| Sbjct 31387 ACTCGATTGTGTTCCCGAAGCCACAATGTGGCATACATCATCAGCCCTGGAACCAAGCCA 31446 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 || ||||| | || || | ||| ||| | ||| || | | ||| | ||| | ||| Sbjct 31447 AAGACTTCCTGTCCTACAGAAAATTTCAGGTGATCAGGGATGTGGGGTGGATAGATCATT 31506 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || ||||| || || || ||||||||||| || |||| | ||| Sbjct 31507 TCTGCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCTCCACCAATCATCTG 31559 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 10863 CATAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATA 10922 ||||||| || ||||||||||| || || ||| ||||||| || |||||||||| Sbjct 35084 CATAAAAGCCAGTCCGCGTACAGTCACATTCATATTGATCAAAACCTTTTGTCATGCATA 35143 Query 10923 CCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTGCAAT---TTAAAAGATAG 10979 | ||||| || ||||| || | ||||||||||| |||||| ||| | ||||| | Sbjct 35144 CACCTCGGTTTTGGCATGGATTTGAACAGCAAGGATTGGCTAAAATAGAATTAAAGACAT 35203 Query 10980 AATAAACAAGACGGTGATTTAAA 11002 || |||||| ||||||||| Sbjct 35204 AAGAAACAA---TTTGATTTAAA 35223 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATG----CGAAA 9548 ||||||||||| || | ||| ||| |||| || ||| | | |||| |||| Sbjct 30311 ATGGAATTGTTATACATGAACTGTGGGTAAGTGTA-TTC---TTGGTTATGGATTTGAAA 30366 Query 9549 ATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTT 9608 |||||| | |||| |||||| |||| ||||| |||||||| || ||||||| ||| Sbjct 30367 GGTATCAGGAAGAAGAGGATGCCAATGGTAAAGGGTGTTGAACTCTGCTGCTATTCTGTT 30426 Query 9609 CTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGG 9666 ||| || ||||| | ||| ||| || | || || ||||| | || | ||| ||| Sbjct 30427 CTGATATTGAAATTGCTGGT--TGAAGAGAAGTTCTGGATCAAACTTCAGTTTGAAATGG 30484 Query 9667 TACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || ||||| | || || ||||| | | || | ||| || |||||||| || Sbjct 30485 TATCCGCTTAAATGTTGCACATAGTCTTCAATCACAATCTTGATGGTTTCTCC 30537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723374160334200