Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2943 401 5e-106 seq3310 104 2e-16 seq1149 104 2e-16 seq590 96.9 3e-14 seq3511 91.5 1e-12 seq2798 89.7 4e-12 seq6372 87.8 1e-11 seq456 87.8 1e-11 >seq2943 Length=159892 Score = 401 bits (444), Expect = 5e-106 Identities = 978/1462 (67%), Gaps = 26/1462 (2%) Strand=Plus/Plus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||| ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 58605 ATTTGTAATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTGACATTGAG 58664 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||||| ||||| | |||||||| || |||||||| || || || | | ||||| Sbjct 58665 GATACCATTTGCATCAATGTCAAATGTAACCTCAATTTGGGGCACACCACGAGGTGCAGG 58724 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 |||||| || ||| | |||| | ||||| ||| || || ||||| | || || Sbjct 58725 TGGGATACCCGTCAAGTCAAATTTGCCCAGCAGATTGTTGTCCTTAGTCATGGCCCGCTC 58784 Query 517393 ACCCTCGAAAATTTGGA-TAGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 |||||| | | ||| | || | ||||| | || || |||||||| || || || | Sbjct 58785 ACCCTCATACACTTGCACCAGCACACTAC--TCTGGTTGTCTGAATAGGTGGTGAA-GGT 58841 Query 517451 CTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 58842 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGCTTGATTAAGGCAGTCATTACACCACC 58901 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 || || || | ||| |||||||| || | ||||||| || | | | ||| | || Sbjct 58902 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGGAGGTCTTGCACATT 58961 Query 517570 TTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628 ||| | | || | ||| | |||||||| || || | ||||||||||||||| ||||||| Sbjct 58962 TTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTT 59020 Query 517629 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGT 517687 |||||||||| | ||| || || | ||| ||||| || || | ||| | || || | Sbjct 59021 CATCAGGATTTATGCTTTTGTTCAGCTCTTTTCCATTAAAGAAGTCTTGTAGCAACTT-T 59079 Query 517688 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747 | ||| || ||||||| ||| || || |||| |||||||||| | ||| ||| Sbjct 59080 TGGATCTTGGGGATACGAGTTGAGCCACCGACTAGAACAATTTCATTGATCTGCCCTTTG 59139 Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCT 517807 ||||| || | ||| | | | || || || ||||||||| | | || | || Sbjct 59140 TCCAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCGCGGAAGAGATCA 59199 Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGA 517865 | | || ||||| || ||| | || || || | || |||||||||| || | Sbjct 59200 GCATTGAGCTCTTCAAAGCGAGCACGGGT--GATGGATGTGTAGAAATCAATTCCATCAA 59257 Query 517866 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 517925 | || || |||| ||||| | || ||| || || ||| || | |||||| || | | Sbjct 59258 ATAATGAGTCAATCTCAATAGAAGCTTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTCT 59317 Query 517926 CACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATA 517983 |||| ||||| | || | | | || | ||| ||| | | || |||| Sbjct 59318 CACAGGCTGTGCGGAGCCGCCTAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATG 59375 Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 || | |||||| || || ||| | | || | |||||| ||||| || ||||| || Sbjct 59376 CTTGCGCTTGAATTCCTCCACAAAGTGACTCACCATACGATTGTCAAAGTCCTCACCACC 59435 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 ||| | ||||| ||| | |||| | | |||| || | |||||||||| | ||||| Sbjct 59436 CAAGTGAGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAAT 59495 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTTT 518157 | |||||| || |||||||||| ||||| || || |||||| | | || | Sbjct 59496 GGAGACATCAAAAGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTCT 59555 Query 518158 GTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 518217 | |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 59556 GCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCTGTGGGCTCATTAATGATGCG 59615 Query 518218 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 518277 || ||||| ||||| | || ||||||||||||| |||||||| | ||| || || || Sbjct 59616 CAGTACATTGAGACCTGTGATGGTTCCTGCATCTTTGGTGGCTTGGCGTTGGGAGTCATT 59675 Query 518278 AAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 || |||||||| ||||| || || ||| || | |||| ||| | || || | Sbjct 59676 GAAGTATGCAGGTACAGTGATTACAGCACTCTG-GACTTTGCAACCCAGGTATGCCTCAG 59734 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGG 518396 | ||| |||||||| | || | ||| || ||||||| ||| || | | |||| Sbjct 59735 CTATTTCCTTCATTTTGGTCAACACCATCGAGGAAATTTCTTCAGGAAAGAAAGTCTTGA 59794 Query 518397 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 518456 ||| | || |||| | | ||| || | | || | | || ||| | Sbjct 59795 CCTCAGCCTTGTACTCAACTTGTACCTTTGGCTTCCCAGCTTCACTCACCACACGAAAAG 59854 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 |||||| |||||||| || || || | | |||| || | | ||||| | || | Sbjct 59855 GCCAGTGCTTCATATCGGACTGCACCGTAGGATCATCGAATTTGCGGCCAATGAGACGCT 59914 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 | |||||||| || || ||| | ||||| || || |||||| |||||||||||||| | Sbjct 59915 TGGCATCAAAGATGGTGTTGTTGGGATTCATGGCCACTTGATTCTTGGCTGCATCTCCGA 59974 Query 518577 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 518636 | || |||| || || ||||| | |||||| ||||| ||||| || ||||| || | Sbjct 59975 TGAGGCGTTCAGTATCCGTAAAGGCAACATAGCTCGGAGTAGTGCGGTTTCCTTGGTCGT 60034 Query 518637 TCGCAATAATTTCAACTTTACC 518658 | ||||| || || || || || Sbjct 60035 TGGCAATGATCTCCACCTTCCC 60056 >seq3310 Length=142830 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | || || |||| |||||| ||||||||||| |||||||| | | ||| Sbjct 37805 TTTTTGTCCAAGCCGTAAGCAATAGCAGCCGCAGTTGGTTCGTTAATAATCCGGAGCACA 37864 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| |||||||| | ||| || || || || || Sbjct 37865 TTGAGACCAGCAATGGTTCCAGCATCTTTTGTGGCTTGGCGTTGGGAGTCATTGAAGTAA 37924 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 37925 GCTGGGACGGTGACTACAGCAT 37946 >seq1149 Length=292586 Score = 104 bits (114), Expect = 2e-16 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| |||||||||| ||||||||||| || ||| | || ||| | |||||||| | Sbjct 218433 TGTACGTTAATTTTGACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTCTCGGT 218374 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 |||||||||||||| ||||| || || ||||| ||||||||| || | |||||| | Sbjct 218373 GTTATTGGAAGAGACAGATATGGGGTATTTCCACTCAGAGGAAAAATTCTTAATGTTCGT 218314 Query 635561 GATGC 635565 || || Sbjct 218313 GAGGC 218309 >seq590 Length=403511 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||||||||| || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 20004 TGTAGTAGCTACTATAGCCTTTGGAATGGGCATTAATAAAGCAGACATTCGGACAGTTAT 20063 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||||| || ||| | || ||| || || || |||||||| || || ||||| Sbjct 20064 ACATTATGGAGCCCCAAAGGAAATGGAATCATACTACCAGGAAATTGGAAGGGCTGGTCG 20123 Query 367113 TGATGG 367118 |||||| Sbjct 20124 TGATGG 20129 >seq3511 Length=131955 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || |||||||| ||||||||||| |||||||||||||| ||| | ||| | ||||| ||| Sbjct 12572 AACTGTACCCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 12513 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| | || || || | | |||||| || ||||| |||||||| | | ||||| Sbjct 12512 GGAGTTGTGGGTAGGGACAAATTTGGAGTGTTTCCACTGCGAGGAAAAATACTTAATGTA 12453 Query 635558 AGGGATGC 635565 |||| || Sbjct 12452 CGGGAAGC 12445 >seq2798 Length=165204 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| ||| || || |||||||||||||| | ||||| || ||||| || Sbjct 13943 TTGTCAACTGCAGACACGTTGAGGATACCATTGGCATCAATGTCAAAGGTCACTTCGATC 13884 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || || || |||| ||||||||||||| ||| ||| | ||| | ||||| |||| Sbjct 13883 TGGGGAACACCTCGAGGAGCAGGTGGGATGCCTGTCAACTCAAACTTGCCCAGCAAATTA 13824 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTC 517398 || ||||| || | || |||||||| Sbjct 13823 TTGTCTTTGGTCATGGCACGCTCACCCTC 13795 >seq6372 Length=64886 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 329 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 388 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 389 CTCTCAAAACATTCAACCCAGCAATCTGTCCAGCATCTTTAGTGGC 434 >seq456 Length=437770 Score = 87.8 bits (96), Expect = 1e-11 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 870806 GATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATT 870865 |||| ||||| ||||||||||| |||||||||||| |||||||| ||||||||||||| Sbjct 123067 GATTTCTCTTCCCCAAATATTGCAAAAGAAATGCATGTTGGACATCTAAGATCAACTATA 123126 Query 870866 ATTGGTGA 870873 ||||| || Sbjct 123127 ATTGGGGA 123134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778881484101778