Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2943 439 3e-118 seq3310 212 8e-50 seq2798 143 3e-29 seq1167 136 5e-27 seq2308 82.4 1e-10 >seq2943 Length=159892 Score = 439 bits (486), Expect = 3e-118 Identities = 1047/1570 (67%), Gaps = 22/1570 (1%) Strand=Plus/Plus Query 6590 TCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT-CTCCCCTTATCATTCGT 6648 || || ||||| ||||| |||||||| ||||| | ||| | || || ||||| || Sbjct 58552 TCTGCTTCTTGCACCATGCGGTCAATGTCATCTTT-GCTAAGACGGCCTTTGTCATTTGT 58610 Query 6649 AATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACC 6708 ||| |||||||| | ||| || | | ||| || | ||| | ||||| | ||||| Sbjct 58611 AATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTGACATTGAGGATACC 58670 Query 6709 ATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAAT 6768 ||||||||||| || || | || | |||||| || ||| | ||||| | ||| || Sbjct 58671 ATTTGCATCAATGTCAAATGTAACCTCAATTTGGGGCACACCACGAGGTGCAGGTGGGAT 58730 Query 6769 ACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTC 6828 |||||| || |||||| | || || | | |||| ||| | | | | || ||||| || Sbjct 58731 ACCCGTCAAGTCAAATTTGCCCAGCAGATTGTTGTCCTTAGTCATGGCCCGCTCACCCTC 58790 Query 6829 ATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTT 6888 ||| |||| | ||| | || || ||| || | |||| | || || Sbjct 58791 ATACACTTGCACCAGCACACTACTCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTTTG 58850 Query 6889 CTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 ||| | ||||| || || || | | || | | ||||| | |||||| ||| || Sbjct 58851 CTTGGTGGGAATAGTTGTGTTACGCTTGATTAAGGCAGTCATTACACCACCAGCAGTCTC 58910 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 | || ||||| || |||| || || | || | |||||||| ||| ||| Sbjct 58911 AATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGGAGGTCTTGCACATTTTCTGATTT 58970 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 |||||| | | || || || || || | || || ||||| || || ||||| || || Sbjct 58971 GTCACCCATCAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTCATCAGGATT 59030 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || |||| ||||| ||||| || ||||| | || || || | ||| || || || Sbjct 59031 TATGCTTTTGTTCAGCTCTTTTCCATTAAAGAAGTCTTGTAGCAACTTTTGGATCTTGGG 59090 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || |||||||| | ||| |||||||| | | | ||| || | ||| | Sbjct 59091 GATACGAGTTGAGCCACCGACTAGAACAATTTCATTGATCTGCCCTTTGTCCAGCTTAGC 59150 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || ||||| | || || |||||||| | | ||||| | || | || || Sbjct 59151 ATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCGCGGAAGAGATCAGCATTGAGCTC 59210 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||||| || |||||||| |||||||| |||||||||| || || |||| || ||||| Sbjct 59211 TTCAAAGCGAGCACGGGTGATGGATGTGTAGAAATCAATTCCATCAAATAATGAGTCAAT 59270 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||||| | | ||| | | ||| | || || || || | |||||| || || || Sbjct 59271 CTCAATAGAAGCTTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTCTCACAGGCTGTGCG 59330 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | || | || || ||| ||| || | ||| || |||||| || || || || || Sbjct 59331 GAGCCGCCTAACTGCTCGCTTGTTGCCAGCAATGTCACGCTTATGCTTGCGCTTGAATTC 59390 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 || ||||| | | | | || || || |||||||||||||| ||||| || Sbjct 59391 CTCCACAAAGTGACTCACCATACGATTGTCAAAGTCCTCACCACCCAAGTGAGTATCTCC 59450 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || || | ||| ||||||||||| || |||||||| | || | || |||||||| || Sbjct 59451 AGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAATGGAGACATCAAAAGT 59510 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTATC 7602 |||||||||| |||||| || || || ||| | || | || || || ||||| Sbjct 59511 GCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTCTGCTCCCTTTTTTATC 59570 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGC 7661 | ||| || || || || || || || || |||||||| || || || ||| || || | Sbjct 59571 CAAACCATAGGCAATGGCAGCAGCTGTGGGCTCATTAATGATGCGCAGTACA-TTGAGAC 59629 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 | | || ||| | |||||||| || ||||| ||||| || || || ||||| || || | Sbjct 59630 CTGTGATGGTTCCTGCATCTTTGGTGGCTTGGCGTTGGGAGTCATTGAAGTATGCAGGTA 59689 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTT 7781 | || | || || | |||||| ||| || || | || || || || ||||||| Sbjct 59690 CAGTGATTACAGCACTCTGGACTTTGCAACCCAGGTATGCCTCAGCTATTTCCTTCATTT 59749 Query 7782 TGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA-ACTGT-TTCGTTTCACCGTTAAA 7839 |||| | |||||||| ||||| ||||||| | || | || || ||| | || | Sbjct 59750 TGGTCAACACCATCGAGGAAATTTCTTCAG--GAAAGAAAGTCTTGACCTCAGCCTTGTA 59807 Query 7840 ATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTT 7899 ||||||| | | | || || | |||| | | || | | | ||| | || Sbjct 59808 CTCAACTTGTACCTTTGGCTT---CCCAGCTTCACTCACCACACGAAAAGGCCAGTGCTT 59864 Query 7900 CATATCGTCTTGGACCTGTTGG-TCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAA 7958 ||||||| || ||| || || || || || | || || |||||||| ||||||| Sbjct 59865 CATATCGGACTGCACC-GTAGGATCATCGAATTTGCGGCCAATGAGACGCTTGGCATCAA 59923 Query 7959 AAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTT 8018 | | ||||| ||||| |||||||| ||| ||||| || || || ||||| || |||| Sbjct 59924 AGATGGTGTTGTTGGGATTCATGGCCACTTGATTCTTGGCTGCATCTCCGATGAGGCGTT 59983 Query 8019 CATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAA 8078 || || |||||||| || || || || || || || || ||||||||||| |||| Sbjct 59984 CAGTA---TCCGTAAAGGCAACATAGCTCGGAGTAGTGCGGTTTCCTTGGTCGTTGGCAA 60040 Query 8079 TAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAA 8138 | || || || ||| || | || |||||||| || || || || || || |||| Sbjct 60041 TGATCTCCACCTTCCCGTGCTGGAAAACTCCGACGCAGGAGTATGTGGTGCCCAAGTCAA 60100 Query 8139 TACCGATTGC 8148 | || || || Sbjct 60101 TGCCTATGGC 60110 >seq3310 Length=142830 Score = 212 bits (234), Expect = 8e-50 Identities = 371/540 (69%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || || |||||||| || | || || || ||||| || || || Sbjct 37163 GCACCGTAGGCTACAGCTTCGTCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAG 37222 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| | | || || || || |||||||| || || || || |||| || || Sbjct 37223 AAATCTTGAAGGAGTTTCTGGATCTTGGGGATTCGGGTGGACCCGCCAACCAGCACAATA 37282 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | ||| | |||||||| | ||| | || || || | ||| || || || |||| | Sbjct 37283 TCGTGCACCTGAGATTTATCAAGCTTCGCATCACGCAGAGCTTTCTCCACGGGATCCAGA 37342 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| || ||| || ||||| || || | ||| ||||| || || Sbjct 37343 GTGCCGCGGAACAAATCGGCGTTCAGCTCTTCAAACCGAGCTCTGGTGATGGAAGTGTAA 37402 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| ||| ||||| | ||||| |||||||| | | || | | || || | Sbjct 37403 AAATCAATGCCCTCGTACAGGGAATCGATTTCAATACTGGCCTGAGTGCTAGAGGACAGT 37462 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| |||||||| || || || | || |||| ||| ||| ||| || Sbjct 37463 GTGCGCTTTGCTCGCTCACAGGCGGTGCGGAGCCGGCGAACGGCCCGCTTGTTTTCGCTG 37522 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || |||||||| || ||||| ||||| || ||| || | | || || Sbjct 37523 ATGTCCTTCTTATGCTTCCGTTTGAACTCGGCAATGAAATGGTTGACCATTCGGTTGTCA 37582 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| || ||||||||||| || || ||||||| ||| ||||||||||| || || Sbjct 37583 AAGTCTTCGCCCCCCAAGTGTGTGTCTCCTGCGGTCGATTTCACTTCAAAGATGCCATCT 37642 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | || ||||| || || ||||| ||||| ||||| || || |||||| Sbjct 37643 TCAATTGTGAGGATGGAGACATCGAAAGTGCCACCCCCCAGATCAAAGATCAGCACGTTC 37702 >seq2798 Length=165204 Score = 143 bits (158), Expect = 3e-29 Identities = 360/543 (66%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || || || || | ||||| || Sbjct 12388 GCTCCATAAGCCACTGCTTCATCTGGATTGATGCTCTTGTTGAGCTCCCTGCCGTTGAAG 12329 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| || | | || || || || || || || || ||||| |||| || || Sbjct 12328 AAGTCCTGCAAAAGCTTCTGGATCTTGGGAATGCGGGTTGAGCCACCCACCAGCACAATG 12269 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| || | || || || | ||| | || || | | || || || || |||| Sbjct 12268 TCATGAACCTGGGACTTGTCCAGCTTGGCATCCCGCAAAGCCTTCTCAACTGGCTCCAGG 12209 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||| | ||| | ||| |||||||| || || ||||| ||||| || ||| Sbjct 12208 GTGCCCCGGAAGAGGTCAGCATTCAGCTCCTCAAAGCGAGCCCGGGTGATGGAGGTGTAG 12149 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT--- 7336 || |||| ||| || || | |||||||||||||||| | || | | ||||| Sbjct 12148 AAGTCAATGCCCTCATAGAGGGAATCAATTTCAATGGAAGCCTGGG---TGGAAGAGCTG 12092 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || ||||| || ||||| || || || || | || || | || ||| || | Sbjct 12091 AGAGTGCGCTTGGCCCGCTCGCAAGCTGTGCGCAGCCGCCGGACCGCCCGCTTATTGTCT 12032 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGA 7455 | || || ||||| || || || || || ||| || | ||||| | | | Sbjct 12031 GTGATGTCCTTCTTGTGCTTGCGCTTGAATTCTGACACA-AAGTGGTTCACCATGCGGTT 11973 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 || |||||||| ||||||| ||| ||||| || || |||| ||| ||||||||||| || Sbjct 11972 GTCAAAATCTTCTCCACCCAGGTGAGTATCTCCAGCTGTCGATTTCACTTCAAAGATGCC 11913 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||||| | | | || |||||||| || || |||||||||||||||||||| || Sbjct 11912 ATCCTCAATCGTCAGAATGGACACATCAAAGGTGCCGCCACCCAGGTCAAAAATGAGGAC 11853 Query 7576 GTT 7578 || Sbjct 11852 ATT 11850 >seq1167 Length=297716 Score = 136 bits (150), Expect = 5e-27 Identities = 462/706 (65%), Gaps = 28/706 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||| || ||||||||||| || || || || || || |||||||||||||| || Sbjct 147150 TCAAAATCCTCCCCACCCAAGTGAGTGTCTCCTGCCGTGGCCTTGACTTCAAAGATGCCA 147209 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | ||||| ||||| || || || ||||||||||||||||| | | Sbjct 147210 TCCTCTGTGGAAAGAATAGAAACGTCAAAGGTGCCCCCGCCCAGGTCAAAAATGAGGATG 147269 Query 7577 -TTCG--TATCGTCGTCTTTGTTCTT---ATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 |||| | | | |||| |||| | ||| || ||||| ||||| || || || || Sbjct 147270 TTTCGACTGCCTGCCTCTTGGTTCCTTGCATCCAGGCCGTAGGCGATGGCGGCAGCTGTG 147329 Query 7631 GGTTCATT-AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || || || || | | | || | ||||| ||||| | | ||||| | || || Sbjct 147330 GGCTCGTTCAAGAGTTTTAGGA-TCTGGAGGCCTGCAATGACTCCAGCATCAATGGTGGC 147388 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 || || || | |||||| |||||||| || ||||| || | || | | || | Sbjct 147389 CTGCCGCTGGGCATCGTTGAAGTAGGCGGGCACCGTGACAATGGCTTGGGAGATGGAGTA 147448 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || | || || | | ||||| |||| | ||||| | || ||||| || Sbjct 147449 GCCCAGGTAGGCCTCAGCTGTTTGCTTCATCTTGGCCAAGACCATGGCAGAGATCTCCTC 147508 Query 7810 AGCCGCAAACTGTTTCGTT--TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCA 7867 | | | | | |||| | ||| || || | | | | | || ||| || Sbjct 147509 GG--GGTAGAAGGTCCGTTGCTTACCTTTGTGGGAGACCTGGACCTTTAGCTTCTCCTCA 147566 Query 7868 --GCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG--TC 7923 || | | || || | | ||||| |||||| || || || || | ||| || Sbjct 147567 TGGCTC-----ACCACAGTAAATGGCCAATGTTTCATGTCCTCCTGCAC--GGTGGCATC 147619 Query 7924 CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGC 7983 | |||| | || || || ||||| ||||| || || ||||| | |||||| | | Sbjct 147620 CTCGTACTTCCGGCCAATCAGCCGCTTGGCATCGAACACCGTGTTCTGGGGGTTGAGAGA 147679 Query 7984 TGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTA 8043 | ||| |||| || | |||||| || || |||| | || || || || ||| | Sbjct 147680 GGCCTGGCTCTTGGCTGGGTCCCCAATCAGGTGTTCTGTGTT---AGTGAATGCCACG-A 147735 Query 8044 CGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCC 8102 | |||| || ||||| || ||||||||||| ||||| || ||||| ||| | ||| | Sbjct 147736 AGCTGGGCGTGGTTCGCTTTCCTTGGTCGTTGGCAATGATCTCTACTTTGTCATGTTGGC 147795 Query 8103 AGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| | ||||| || | || ||||| | ||||| ||||| || Sbjct 147796 AGACGGCCACGCAGGAGAAGGTGGTTCCAAGGTCAATCCCGATAGC 147841 >seq2308 Length=189564 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| || || || ||||||||||| ||||| |||||||| || || || ||||||||||| Sbjct 133921 ATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCTCCAT 133980 Query 115122 AAAATCAAAGGGATT 115136 |||||||| ||||| Sbjct 133981 GAAATCAAATGGATT 133995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634822275634920