Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7460 152 1e-31 seq6913 149 1e-30 seq6119 149 1e-30 >seq7460 Length=44690 Score = 152 bits (168), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| ||| || | |||||||| Sbjct 44267 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCTTCC 44208 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| |||||||||||||| ||||| || Sbjct 44207 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 44148 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| ||||| || ||||| | ||| Sbjct 44147 ATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCCACCTCCAGGGTGATGGTC 44091 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || || || | ||||||| Sbjct 44090 TTCCCAGTCAAGGTCTTCACAAAGATCTGCATTT 44057 Score = 149 bits (164), Expect = 1e-30 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| || |||||||| || || || ||||| |||| ||| || | |||||||| ||| Sbjct 44492 AGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCTTCCAGC 44433 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| || | || ||||| |||||||||||||| ||||| || || Sbjct 44432 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATC 44373 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTT 195111 || ||||||||||||||||||||| ||| ||||| || ||||| | ||||| Sbjct 44372 TTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCCACCTCCAGGGTGATGGTCTTC 44316 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 44315 CCAGTCAAGGTCTTCACAAAGATCTGCAT 44287 Score = 122 bits (134), Expect = 2e-22 Identities = 135/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 194965 TAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGG 195024 || |||| ||| || | |||||||| |||||||| || || ||||| || | || ||| Sbjct 44690 TAGTCGGAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGG 44631 Query 195025 TCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084 || |||||||||||||| ||||| || || || ||||||||||||||||||||| Sbjct 44630 TCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---G 44574 Query 195085 CTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || ||||| | ||||| || ||||| || || || || | ||||| Sbjct 44573 CTTGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44515 >seq6913 Length=53205 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| ||| || | |||||||| Sbjct 52774 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCATCTTCC 52833 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| |||||||||||||| ||||| || Sbjct 52834 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 52893 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| ||||| || ||||| | ||| Sbjct 52894 ATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCCACCTCCAGGGTGATGGTC 52950 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || || || | ||||| Sbjct 52951 TTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 52982 Score = 123 bits (136), Expect = 6e-23 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || | |||| ||| || || |||||||| Sbjct 53002 ACCAGGTGGAGGGTGGACTCCTTCTGGATGCCTTCGTCGGAAAGCGTGCTGCCATCTTCC 53061 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| |||||||||||||| ||||| || Sbjct 53062 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 53121 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || |||| |||||||||||||||| ||| ||||| | |||||| ||| Sbjct 53122 ATCTTGGCCTTGGCGTTCTCAATGGTGTC---GCTTGGCTCCACCGCCAGGGTAGTGGTC 53178 Query 195109 TTTCCTGTCAAAGTTTTTACGAA 195131 || || ||||| || || || || Sbjct 53179 TTCCCAGTCAAGGTCTTCACAAA 53201 >seq6119 Length=68287 Score = 149 bits (164), Expect = 1e-30 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || ||||| || || | ||| || Sbjct 55731 TCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGAAAGGGT 55672 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || || || ||||||||||| Sbjct 55671 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCC 55612 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||||||||| || || || || || |||||||||||||| |||| |||||||| Sbjct 55611 TTCTTTGTCCTGGATCTTAGCTTTTACATTCTCAATGGTGTC---ACTTGGCTCCACTTC 55555 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| | ||||| |||||||| || || || || | ||||||| Sbjct 55554 CAGGGTGATGGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATTT 55508 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | ||| || Sbjct 55959 TCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 55900 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || || ||||| || | || || || ||||||||||| Sbjct 55899 GCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCC 55840 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||||||||| || || || ||| || |||||||||||||| |||| ||||| || Sbjct 55839 TTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTC 55783 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| || || || || | ||||| Sbjct 55782 CAGAGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 55738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108925599591671