Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2943 206 2e-47 seq2798 120 2e-21 seq3310 113 4e-19 seq3511 87.8 1e-11 >seq2943 Length=159892 Score = 206 bits (228), Expect = 2e-47 Identities = 379/550 (69%), Gaps = 8/550 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || ||||| || || || || |||||||| || || || |||| || | || || Sbjct 60110 GCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAG 60051 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| || ||||| ||| | |||||||| |||||| | || ||| Sbjct 60050 GTGGAGATCATTGCCAACGACCAAGGAAACCGCACTACTCCGAGCTATGTTGCCTTTACG 59991 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACC 550168 || ||||||| | | || |||||||| || |||||| ||| || ||||| | | Sbjct 59990 GATACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCCA-TG--AATCCCAAC 59934 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || || |||||||| || ||| | ||||| | | || ||||| | || || ||| Sbjct 59933 AACACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTCGATGATCCTACGGTGCAG 59874 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | ||||||||||| |||||||| | | || | || |||| || || | | || Sbjct 59873 TCCGATATGAAGCACTGGCCTTTTCGTGTGGTGAGTGAAGCTGGGAAGCCAAAGGTACAA 59814 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | |||| | | | || | ||| | || ||| ||||||| || ||||| || Sbjct 59813 GTTGAGTA-CAAGGCTGAGGTCAAGACTTTCTTTCCTGAAGAAATTTCCTCGATGGTGTT 59755 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||||||| ||| ||| || | | ||| |||| | ||| ||||| Sbjct 59754 GACCAAAATGAAGGAAATAGCTGAGGCATACCTGGGTTGCAAAGTCCAGAGTGCTGTAAT 59695 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 |||||||| ||||| || |||||||| ||||| ||||| || |||||||| ||| || Sbjct 59694 CACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCAGGAACCAT 59635 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || || ||||| || || || || ||||| || || |||||||| |||| ||||| Sbjct 59634 CACAGGTCTCAATGTACTGCGCATCATTAATGAGCCCACAGCTGCTGCCATTGCCTATGG 59575 Query 550528 ACTTGATAAA 550537 | |||||| Sbjct 59574 TTTGGATAAA 59565 Score = 125 bits (138), Expect = 6e-23 Identities = 445/687 (65%), Gaps = 20/687 (3%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCT---TTCATCTGGTACTCAAACCACTATTGAA 551969 || || || || ||||||||||| | || ||| || || ||| | ||||||| Sbjct 59327 ACAGCCTGTGAGAGAGCCAAACGTACCCTGAGTTCCTCC---ACCCAAGCTTCTATTGAG 59271 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029 | || ||||||||||| |||||||||| | || | || | | || |||||| Sbjct 59270 ATTGACTCATTATTTGATGGAATTGATTTCTACACATCCATCACCCGTGCTCGCTTTGAA 59211 Query 552030 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGAT 552089 || | | |||||||||| | || ||||||| || || | | | | | ||| Sbjct 59210 GAGCTCAATGCTGATCTCTTCCGCGGTACTCTTGAACCTGTGGAGAAGGCTCTTCGTGAT 59151 Query 552090 TCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATT 552149 | ||| | || ||| | | |||||||||| || || ||||| || || | || Sbjct 59150 GCTAAGCTGGACAAAGGGCAGATCAATGAAATTGTTCTAGTCGGTGGCTCAACTCGTATC 59091 Query 552150 CCTAAAATTCGCGAAATGTT-----AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 || || || | ||| ||| ||| ||| ||| ||||| ||| | | || ||| Sbjct 59090 CCCAAGAT---CCAAAAGTTGCTACAAG-ACTTCTTT-AATGGAAAAGAGCTGAACAAAA 59036 Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTC 552262 | | ||||| ||||| ||||| || |||||||| || | || || |||||||| | Sbjct 59035 GCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAGGCTGCTATTCTGATGG 58976 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 |||||| | | ||||| | ||| | | | || | ||||| | || || ||||| Sbjct 58975 GTGACAAA-TCA-GAAAATGTGCAAGACCTCCTGCTGCTTGATGTAGCACCACTTTCTCT 58918 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | || || | ||| ||| | |||||| | ||| | | || || |||||||| Sbjct 58917 GGGTATTGAGACTGCTGGTGGTGTAATGACTGCCTTAATCAAGCGTAACACAACTATTCC 58858 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 || || | | || | || |||||||| || || | | ||| | || Sbjct 58857 CACCAAGCAAACCCAGACCTTCACCACCTATTCAGACAACCAGAGTAGTGTGCTGGTGCA 58798 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 | | | ||| || || | | ||||| || || |||| || || | ||| | || Sbjct 58797 AGTGTATGAGGGTGAGCGGGCCATGACTAAGGACAACAATCTGCTGGGCAAATTTGACTT 58738 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 ||||| || ||||| |||||||| || || |||||||| ||||| || || || || Sbjct 58737 GACGGGTATCCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTTACATTTGACATTGA 58678 Query 552563 TGCCAATGGAATTTTGAATGTGACTGC 552589 ||| ||||| || | ||||| ||||| Sbjct 58677 TGCAAATGGTATCCTCAATGTCACTGC 58651 >seq2798 Length=165204 Score = 120 bits (132), Expect = 2e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| ||||||| || || || ||||| ||||| |||||||| || || || ||||| | Sbjct 11305 TTACCAATGCAGTTATCACAGTCCCAGCCTATTTCAATGACTCTCAGCGGCAGGCTACCA 11364 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 |||||||||| ||||| || || ||||||||||| || ||||||||||| || || | Sbjct 11365 AAGATGCTGGCACCATTGCAGGCCTCAATGTTCTTCGCATCATCAATGAACCCACAGCAG 11424 Query 550512 CTGCACTTGCATATGGACTTGATAAA 550537 | || |||| || || || |||||| Sbjct 11425 CAGCCATTGCTTACGGGCTGGATAAA 11450 >seq3310 Length=142830 Score = 113 bits (124), Expect = 4e-19 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | || || ||||| || || |||||||| ||||| ||||| || Sbjct 37953 GTTACAAATGCTGTAGTCACCGTCCCAGCTTACTTCAATGACTCCCAACGCCAAGCCACA 37894 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||||| || ||||| || || ||||| || ||||| ||||| Sbjct 37893 AAAGATGCTGGAACCATTGCTGGTCTCAATGTGCTCCGGATTATTAACGAACCAACTGCG 37834 Query 550511 GCTGCACTTGCATATGGACTTG 550532 ||||| |||| || || |||| Sbjct 37833 GCTGCTATTGCTTACGG-CTTG 37813 >seq3511 Length=131955 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 428254 TGTAAAGATATATCTTGCGCTTGCGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTG 428313 ||||||||||||||| | |||||| || ||||| || || || ||||||||||| || Sbjct 6372 TGTAAAGATATATCTAGGGCTTGCAGAGTCTTTTCCACCATGCAGCCTAGTTCCAAACTG 6431 Query 428314 TCCATTAGGCATCAATAAATTAATATTATTACTTCCCACATAATTTTGGGCCATATTAAC 428373 ||| | || | ||| || | || || || |||||| ||||||| |||| |||||| Sbjct 6432 ACCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAAC 6491 Query 428374 AATGGT 428379 ||| || Sbjct 6492 AATAGT 6497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027227528160370