Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1203 188 9e-42 seq5777 172 7e-37 seq930 149 8e-30 seq9144 129 7e-24 seq2189 96.9 4e-14 >seq1203 Length=291960 Score = 188 bits (208), Expect = 9e-42 Identities = 164/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||| |||||| | | || Sbjct 79121 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGACCTCGCGGGAGGTGA 79180 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||||| ||||||| |||| | Sbjct 79181 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 79240 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 79241 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 79300 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 79301 GCACCTGCTTCAGCACCTTGTAGA 79324 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1254422 GTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1254481 ||||||||| ||| |||||| | ||||||| |||| ||| |||||| || ||| | Sbjct 13294 GTGCGCCAGGCGGGAGGCCTCTCCGGCGATGCGCTCGAAGATGGCGTTGAAGAAGGAGGT 13235 Query 1254482 CATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1254541 ||||| | | | |||| ||||||| | |||||||||||||||||| |||||||| Sbjct 13234 CATGATGCTCTTGGCCTTGGAGGAGATGGCGGTGTCGGGGTGCACCTGCTTCAGCACCTT 13175 Query 1254542 GTAGA 1254546 ||||| Sbjct 13174 GTAGA 13170 >seq5777 Length=73217 Score = 172 bits (190), Expect = 7e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1254347 GGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGT 1254406 |||||| ||| || ||| | |||||||||||| |||||||||||||| | | ||| || Sbjct 11551 GGCCAGCTCGGCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGT 11492 Query 1254407 GTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1254466 | ||||||||| |||||||||| ||| |||||| | ||||||| ||| ||||| Sbjct 11491 GGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCGGCGATGCGCTCGGAGATGTC 11432 Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||||| || | |||||||| ||| | |||| ||||||||| |||||||||||| Sbjct 11431 GTTGACGAAGGGGTTCATGATTCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCAC 11372 Query 1254527 CTGCTTGAGCACCTTGTAGA 1254546 |||||| ||||||||||||| Sbjct 11371 CTGCTTCAGCACCTTGTAGA 11352 >seq930 Length=319869 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||| ||||||||||| || | | || Sbjct 87896 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCGGGAGGTGA 87837 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 87836 TGGTCGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 87777 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 87776 TGTCGTTCACGAAGGAGTTCATGATGCTCATGGCTTTGGACGAGATGCCCGTGTCGGGGT 87717 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 87716 GGACCTGCTTCAGCACCTTGTA 87695 >seq9144 Length=24189 Score = 129 bits (142), Expect = 7e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| |||||| |||| ||||||||| ||| | | || Sbjct 11664 GCTTGGCCAGCGCGCCGGGCAGCCGGAGGCGCGCGGCCGTCTGGATCGGGCGGGAGGTGA 11605 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||||| ||||||| |||| | Sbjct 11604 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 11545 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || ||| | |||| ||| | |||| ||||||||| ||||||| Sbjct 11544 TGTCGTTGACGAAGGAGGTTATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGG 11485 Query 1254523 GCACCTGCT 1254531 ||||||||| Sbjct 11484 GCACCTGCT 11476 >seq2189 Length=213088 Score = 96.9 bits (106), Expect = 4e-14 Identities = 122/164 (74%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 512000 GTGCTGGGCATCGAGGCCGCCGTGGCCGTGCTCTTTTCCGAGA--TCAAGGCCGTCATCT 512057 ||||||||||||||||| | | || | ||||| ||||| | | |||||||| Sbjct 51718 GTGCTGGGCATCGAGGCTGT-GAGGAAG-GCTCTGGAACGAGAGTTGTACCACGTCATCT 51661 Query 512058 CCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCT 512117 ||||||| ||| | ||||||||| | |||||||| || ||| | ||||||||| || Sbjct 51660 CCTTTGATGGCTCGTACGTCAACTATCGCCACTTGGCCCTGCTCTGTGACACCATGACCT 51601 Query 512118 GCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 ||||||| || ||||| ||||||| || ||| |||||||| Sbjct 51600 GCCGCGGGCATTTGATGGCCATCACGCGGCATGGCGTCAACCGC 51557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103929404053821