Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2943 410 9e-109 seq3310 107 1e-17 seq1149 100 2e-15 seq3511 96.9 3e-14 seq590 93.3 3e-13 seq2798 89.7 4e-12 seq6372 87.8 1e-11 seq456 87.8 1e-11 >seq2943 Length=159892 Score = 410 bits (454), Expect = 9e-109 Identities = 980/1462 (67%), Gaps = 26/1462 (2%) Strand=Plus/Plus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| ||||| || || ||| ||| || || | ||||| ||||| || Sbjct 58605 ATTTGTAATTGTAATCTTGTTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTGACATTGAG 58664 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||| ||||| | |||||||| || |||||||| || || || | | ||||| Sbjct 58665 GATACCATTTGCATCAATGTCAAATGTAACCTCAATTTGGGGCACACCACGAGGTGCAGG 58724 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 |||||| || ||| | |||| | ||||| ||| || || ||||| | || || Sbjct 58725 TGGGATACCCGTCAAGTCAAATTTGCCCAGCAGATTGTTGTCCTTAGTCATGGCCCGCTC 58784 Query 281560 ACCCTCGAAAATTTGGA-TAGTA-ACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 |||||| | | ||| | || | ||||| | || || |||||||| || || || | Sbjct 58785 ACCCTCATACACTTGCACCAGCACACTAC--TCTGGTTGTCTGAATAGGTGGTGAA-GGT 58841 Query 281618 CTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676 |||| ||| || ||||| |||||||| | | || | ||||| | |||||| Sbjct 58842 CTGGGTTTGCTTGGTGGGAATAGTTGTGTTACGCTTGATTAAGGCAGTCATTACACCACC 58901 Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 281736 ||| || || | ||| |||||||| || | ||||||| || | | | ||| | || Sbjct 58902 AGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGGAGGTCTTGCACATT 58961 Query 281737 TTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 ||| | | || | ||| | |||||||| || || | ||||||||||||||| ||||||| Sbjct 58962 TTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTT 59020 Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGT 281854 |||||||||| | ||| || || | ||| ||||| || || | ||| | || || | Sbjct 59021 CATCAGGATTTATGCTTTTGTTCAGCTCTTTTCCATTAAAGAAGTCTTGTAGCAACTT-T 59079 Query 281855 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 | ||| || ||||||| ||| || || |||| |||||||||| | ||| ||| Sbjct 59080 TGGATCTTGGGGATACGAGTTGAGCCACCGACTAGAACAATTTCATTGATCTGCCCTTTG 59139 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 ||||| || | ||| | | | || || || ||||||||| | | | || | || Sbjct 59140 TCCAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCGCGGAAGAGATCA 59199 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGA 282032 | | || ||||| || ||| | || || || | || |||||||||| || | Sbjct 59200 GCATTGAGCTCTTCAAAGCGAGCACGGGT--GATGGATGTGTAGAAATCAATTCCATCAA 59257 Query 282033 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 282092 | || || |||| ||||| | || ||| || || ||| || | |||||| || | | Sbjct 59258 ATAATGAGTCAATCTCAATAGAAGCTTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTCT 59317 Query 282093 CACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATA 282150 |||| ||||| | || | | | || | ||| ||| | | || |||| Sbjct 59318 CACAGGCTGTGCGGAGCCGCCTAACTGC--TCGCTTGTTGCCAGCAATGTCACGCTTATG 59375 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 || | |||||| || || ||| | | || | |||||| ||||| || ||||| || Sbjct 59376 CTTGCGCTTGAATTCCTCCACAAAGTGACTCACCATACGATTGTCAAAGTCCTCACCACC 59435 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 ||| | ||||| ||| | |||| | | |||| || | |||||||||| | ||||| Sbjct 59436 CAAGTGAGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATGGTCAAAAT 59495 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT------TTCTTT 282324 | |||||| || |||||||||| ||||| || || |||||| | | || | Sbjct 59496 GGAGACATCAAAAGTGCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTCT 59555 Query 282325 GTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 282384 | |||||||| | |||||| |||| |||||||| || || |||||||| || | Sbjct 59556 GCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCTGTGGGCTCATTAATGATGCG 59615 Query 282385 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 || ||||| ||||| | || ||||||||||||| |||||||| | ||| || || || Sbjct 59616 CAGTACATTGAGACCTGTGATGGTTCCTGCATCTTTGGTGGCTTGGCGTTGGGAGTCATT 59675 Query 282445 AAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAATATAAGCGCTTG 282503 || |||||||| ||||| || || ||| |||| |||| || | || || | Sbjct 59676 GAAGTATGCAGGTACAGTGATTACAGCACTCTG-GACTTTGCAACCCAGGTATGCCTCAG 59734 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGG 282563 || ||| |||||||| | || | ||| || ||||||| ||| ||| | | |||| Sbjct 59735 CTATTTCCTTCATTTTGGTCAACACCATCGAGGAAATTTCTTCAGGAAAGAAAGTCTTGA 59794 Query 282564 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 282623 ||| | || |||| | | ||| || | | || | | || ||| | Sbjct 59795 CCTCAGCCTTGTACTCAACTTGTACCTTTGGCTTCCCAGCTTCACTCACCACACGAAAAG 59854 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 282683 |||| | |||||||| || || || | | |||| || | | ||||| | || | Sbjct 59855 GCCAGTGCTTCATATCGGACTGCACCGTAGGATCATCGAATTTGCGGCCAATGAGACGCT 59914 Query 282684 TTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAA 282743 | |||||||| || || ||| | ||||| | || |||||| |||||||||||||| | Sbjct 59915 TGGCATCAAAGATGGTGTTGTTGGGATTCATGGCCACTTGATTCTTGGCTGCATCTCCGA 59974 Query 282744 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 282803 | || |||| || || ||||| | |||||| ||||| ||||| || ||||| || | Sbjct 59975 TGAGGCGTTCAGTATCCGTAAAGGCAACATAGCTCGGAGTAGTGCGGTTTCCTTGGTCGT 60034 Query 282804 TCGCAATAATTTCAACTTTACC 282825 | ||||| || || || || || Sbjct 60035 TGGCAATGATCTCCACCTTCCC 60056 >seq3310 Length=142830 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | || || |||| |||||| ||||||||||| |||||||| | | ||| Sbjct 37805 TTTTTGTCCAAGCCGTAAGCAATAGCAGCCGCAGTTGGTTCGTTAATAATCCGGAGCACA 37864 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| |||||||| | ||| || || || || || Sbjct 37865 TTGAGACCAGCAATGGTTCCAGCATCTTTTGTGGCTTGGCGTTGGGAGTCATTGAAGTAA 37924 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || | || |||| ||| || Sbjct 37925 GCTGGGACGGTGACTACAGCATTTGTAAC 37953 >seq1149 Length=292586 Score = 100 bits (110), Expect = 2e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| |||||||||| ||||||||||| || ||| | || ||| | ||||| || | Sbjct 218433 TGTACGTTAATTTTGACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTCTCGGT 218374 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 |||||||||||||| ||||| || || ||||| ||||||||| || | |||||| | Sbjct 218373 GTTATTGGAAGAGACAGATATGGGGTATTTCCACTCAGAGGAAAAATTCTTAATGTTCGT 218314 Query 400417 GATGC 400421 || || Sbjct 218313 GAGGC 218309 >seq3511 Length=131955 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || |||||||| ||||||||||| |||||||||||||| ||| | ||| | ||||||||| Sbjct 12572 AACTGTACCCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 12513 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| | || || || | | |||||| || ||||| |||||||| | | ||||| Sbjct 12512 GGAGTTGTGGGTAGGGACAAATTTGGAGTGTTTCCACTGCGAGGAAAAATACTTAATGTA 12453 Query 400414 AGGGATGC 400421 |||| || Sbjct 12452 CGGGAAGC 12445 >seq590 Length=403511 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||||||||| || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 20004 TGTAGTAGCTACTATAGCCTTTGGAATGGGCATTAATAAAGCAGACATTCGGACAGTTAT 20063 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||| ||||| || ||| | || ||| || || || |||||||| || || ||||| Sbjct 20064 ACATTATGGAGCCCCAAAGGAAATGGAATCATACTACCAGGAAATTGGAAGGGCTGGTCG 20123 Query 131296 TGATGG 131301 |||||| Sbjct 20124 TGATGG 20129 >seq2798 Length=165204 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| ||| || || |||||||||||||| | ||||| || ||||| || Sbjct 13943 TTGTCAACTGCAGACACGTTGAGGATACCATTGGCATCAATGTCAAAGGTCACTTCGATC 13884 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || |||| ||||||||||||| ||| ||| | ||| | ||||| |||| Sbjct 13883 TGGGGAACACCTCGAGGAGCAGGTGGGATGCCTGTCAACTCAAACTTGCCCAGCAAATTA 13824 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTC 281565 || ||||| || | || |||||||| Sbjct 13823 TTGTCTTTGGTCATGGCACGCTCACCCTC 13795 >seq6372 Length=64886 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 329 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 388 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 389 CTCTCAAAACATTCAACCCAGCAATCTGTCCAGCATCTTTAGTGGC 434 >seq456 Length=437770 Score = 87.8 bits (96), Expect = 1e-11 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 637129 GATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATT 637188 |||| ||||| ||||||||||| |||||||||||| |||||||| ||||||||||||| Sbjct 123067 GATTTCTCTTCCCCAAATATTGCAAAAGAAATGCATGTTGGACATCTAAGATCAACTATA 123126 Query 637189 ATTGGTGA 637196 ||||| || Sbjct 123127 ATTGGGGA 123134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738710116991538