Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6119 192 1e-43 seq6913 145 1e-29 seq5783 145 1e-29 seq7460 136 8e-27 seq3991 91.5 3e-13 >seq6119 Length=68287 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | || || || || || ||||| |||||||| ||||| Sbjct 55736 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGAA 55677 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || ||||| ||||| Sbjct 55676 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 55617 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| ||||||||||| ||||| || ||| | || || ||| Sbjct 55616 ATGCCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCACTTGGCTCCACT 55557 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| || || |||||||||||||||||||| ||||| ||||||||| || Sbjct 55556 TCCAGGGTGATGGTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATTTTT 55506 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | || || || || || ||||| || || || ||||| Sbjct 55964 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 55905 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || ||||||||||| || || || ||||| ||||| Sbjct 55904 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 55845 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || ||||| ||||| || ||| | || || || Sbjct 55844 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACC 55785 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || |||||||| |||| ||||| ||||| |||||||| Sbjct 55784 TCCAGAGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 55738 >seq6913 Length=53205 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || ||||||||||| || | ||| || || || || ||||| || || || || || Sbjct 52755 ACCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 52814 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||||||||| || || || || || ||||| Sbjct 52815 AAGCGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 52874 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || ||||| || || || || ||||| || || | || || || Sbjct 52875 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCCAC 52934 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 52935 CTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 52982 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || || || || ||||| || | || || Sbjct 52984 CCACCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGCCTTCGTCGGAA 53043 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || ||||| || || || ||||||||||| || || || || || ||||| Sbjct 53044 AGCGTGCTGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 53103 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || | || ||||| || || | || || || Sbjct 53104 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGGCGTTCTCAATGGTGTCGCTTGGCTCCACC 53163 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 ||| || | ||||| || ||||| ||||| ||||| ||| Sbjct 53164 GCCAGGGTAGTGGTCTTCCCAGTCAAGGTCTTCACAAAGATC 53205 >seq5783 Length=75334 Score = 145 bits (160), Expect = 1e-29 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| |||| |||||||||||||| ||||| ||||| || || || | || || || Sbjct 48204 GATAGCAGGAGCGTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAGT 48145 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||| ||||| || || || || |||||||| | |||||| | || || ||||| ||||| Sbjct 48144 GTTCTTCATCCTAAGAAAGAAATTTAATCAAATCAGTTTTCTTCATGTCTATCACCATTT 48085 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 |||||||||||||| | ||| | ||||| |||||| |||| ||||| |||| Sbjct 48084 CACTATGTTTACTTTGTGGTGGATTGGCATAAAATGGGTTGCAGGAGGACAAG 48032 Score = 100 bits (110), Expect = 6e-16 Identities = 117/156 (75%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||||||||| |||||||| ||||| | || || |||||| ||||||||| || ||||| Sbjct 46587 AGCATTTTTTGGAGCTCATATGAATGCTTTCATTCATGTTGTTATGTATATGTACTATGG 46528 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| || | || | ||||| | ||||||||||| ||| | || || Sbjct 46527 ACTAGCTGCCTGTGGCCCAAAATTCCACAAGTACCTTTGGTGGAAGCGATATTTGACCAT 46468 Query 60430 AATGCAATT-GT---TACAATTCCATATAGCTATAG 60461 ||||||||| || || ||| |||||| ||||| Sbjct 46467 AATGCAATTAGTAAGTAATATTATATATAGATATAG 46432 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || ||||| |||| |||||||| ||||| || ||||| Sbjct 44745 CAGTTCCATGTGACTATTGGCCACACCGCCCTGTCTATTTACATTGATTGCCCCTTTCCT 44686 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| | | ||||| || || |||||||||||| Sbjct 44685 AAATGGATGCACTGGGGTGTCATTGTCTATGCCACCACTTTCATTTTTCTGTTTGGTAAC 44626 Query 60563 TTCTATTTTAGAACATACAAGA 60584 ||||| | | | |||||||||| Sbjct 44625 TTCTACTATCGGACATACAAGA 44604 >seq7460 Length=44690 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || || || || ||||| || || || || || Sbjct 44285 CCACCACGCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 44226 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || ||||| Sbjct 44225 AGCGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 44166 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || ||||| || || | || || || Sbjct 44165 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCCACC 44106 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||| || ||||| ||||| ||||| ||||||||| Sbjct 44105 TCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATT 44058 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| | | ||| || || || || ||||| || || || || || Sbjct 44513 CCACCCCGCAGACGCAGGGCCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 44454 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || ||||| Sbjct 44453 AGCGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 44394 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || ||||| || || | || || || Sbjct 44393 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCCACC 44334 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 44333 TCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 44287 >seq3991 Length=124748 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| ||||| ||||| || ||||||||||| || ||| |||| || || || Sbjct 44349 CCTTCCTTATCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTAGGCTCCACCTCA 44290 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || ||||| |||| || || ||||| ||||||||| Sbjct 44289 AGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCATT 44245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981335171719307